Detail information of Os12g0264500_circ_g.18


General Information
CircRNA Name Os12g0264500_circ_g.18
ID in PlantcircBase osa_circ_011069
Alias Os_ciR2855
Organism Oryza sativa
Position chr12: 9357980-9361028  JBrowse»
Reference genome IRGSP-1.0.38
Type   u-circRNA
Identification method CIRCexplorer, PcircRNA_finder, find_circ
Parent gene Os12g0264500
Parent gene annotation Similar to CoA-thioester hydrolase CHY1 (3-hydroxyisobutyryl-coe
nzyme A hydrolase). (Os12t0264500-01);Similar to CHY1. (Os12t026
4500-02);Conserved hypothetical protein. (Os12t0264500-03);Simil
ar to cDNA clone:J013000A22, full insert sequence. (Os12t0264500
-04)
Parent gene strand +
Alternative splicing Os12g0264500_circ_igg.1 Os12g0264500_circ_igg.2 Os12g0264500_circ_g.1 Os12g0264500_circ_g.2 Os12g0264500_circ_g.3 Os12g0264500_circ_g.4 Os12g0264500_circ_g.5 Os12g0264500_circ_g.6 Os12g0264500_circ_g.7 Os12g0264500_circ_g.8 Os12g0264500_circ_g.9 Os12g0264500_circ_g.10 Os12g0264500_circ_g.11 Os12g0264500_circ_g.12 Os12g0264500_circ_g.13 Os12g0264500_circ_g.14 Os12g0264500_circ_g.15 Os12g0264500_circ_g.16 Os12g0264500_circ_g.17 Os12g0264500_circ_g.19 Os12g0264500_circ_g.20 Os12g0264500_circ_g.21 Os12g0264500_circ_g.22 Os12g0264500_circ_g.23 Os12g0264500_circ_g.24 Os12g0264500_circ_g.25 Os12g0264500_circ_g.26 Os12g0264500_circ_g.27
Support reads 4/1
Tissues root/shoot, root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os12t0264500-02:8
Os12t0264500-03:8
Os12t0264500-01:8
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CACTTAAAAAGGTTGATACATCTGATCCATTTGCTATATGTGGAATTATCGATCAATATTCGCA
ACAACCATCTCTGAAAGAAAAAAGCGCTCTGAATAGgttttggtagaagcaaatggtgtaacac
ggacattggttttgaataggccaaagcagttgaatgccctctcctctgcaatggtatgacttct
aaagacaa
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 671
Transcript exons: 9357980-9358060,9358187-9358255,9358710-9358773,9358971-
9359050,9359147-9359230,9359401-9359485,9360641-9360726,
9360907-9361028
GTTTTGGTAGAAGCAAATGGTGTAACACGGACATTGGTTTTGAATAGGCCAAAGCAGTTGAATG
CCCTCTCCTCTGCAATGATAACGTGTTTTTTGAGGTGCTTCACTGCTTATGAGGAAGATGATGG
AGTTAAACTATTGATTGTGAAGGGAAAAGGAAGAGCATTTTGTGCAGGTGGAGATGTTGCTGCA
GTTGTCCGGTCTATAAATAATGATAGCTGGAAATATGGTGCTCATTTTTTCCGAAATGAATTTC
TGTTAAACTATATCATTGCAACATATAGCAAACCTCAGGTTTCGCTTCTAACTGGAATTGTCAT
GGGTGGAGGTGCTGGTGTTTCTATACATGGAAGGTTCCGAGTTGTCACAGATAGCACGGTTTTT
GCTATGCCAGAAACAGCGTTGGGTCTCTTTCCAGATATTGGGGCTTCATATTTTCTATCTCGAC
TTCTTGGGTTCTATGGAGAGTATGTTGGTCTTACTGGTGTAAGGTTGGATGCTGCTGAAATGCT
TGCTTGTGGCCTAGCAACTCATTTTGTACCTTCAGATAGGCTGTCTTTGCTAGAAGAATCACTT
AAAAAGGTTGATACATCTGATCCATTTGCTATATGTGGAATTATCGATCAATATTCGCAACAAC
CATCTCTGAAAGAAAAAAGCGCTCTGAATAG

Genomic sequence GTTTTGGTAGAAGCAAATGGTGTAACACGGACATTGGTTTTGAATAGGCCAAAGCAGTTGAATG
CCCTCTCCTCTGCAATGGTATGACTTCTAAAGACAAAAACATGACAATGATTCAATAAGTAATG
GGGCATATATGGTATTAGCGACTATATATAGGGTGCAGGAACACTGATTTGATAATTTTTTTTT
GCTTTCATTTTCTAGATAACGTGTTTTTTGAGGTGCTTCACTGCTTATGAGGAAGATGATGGAG
TTAAACTATTGATTGTGAAGGTAACGATCATGTTTGAGTCCTACAATAATGAAATATCTAATGT
GGTCCATATTTGAACAATGTATTTAGAGGCTTATCTTTTTTTAAAAAATGAATAACGAGGTAGT
AGCTAACATCAAACATGAATTGCCTGTTTAAATTTCCAAAATCATGAATTCAAAGTTTCATCCG
CTTATTGAAGTTTGTACAACCAAGTTGTAGTAACGTAAAACAACAATGCTGCCCGTGCCTTTTG
TTGCATGCTAACTGTCCTTTTGCCATTTGTAAATGTAATTGATTTTCGCCGGGATGAAATGTAA
TTGATTTTCTGCTGCTGATATATGAGTCTTGACTTATTGGGATAATTCCATCTTTAGTACCTCC
TGCTGTTACCTTTACTGCTGCTGTTTGTGCTCAGCTTGATTTTTATAACTCGTTGCCATTCTTG
TCATCACTTGTTTTTTCCTTTGTCAGGGAAAAGGAAGAGCATTTTGTGCAGGTGGAGATGTTGC
TGCAGTTGTCCGGTCTATAAATAATGGTAAACAACACATATGATGCATCCTTGAGACTATGATG
TCAAATATCTTGAGCTGGTTTATTTTTGGCTTTTAGCTGTTTTGCTTTGACTTCCTTTGCCTTT
CCATATGCTATATGCTAATTCACTGTTAACATGCAATATATAGAGAATTTTCTTCTTGACATCT
AATTAGTTTTACTATGCATTTCTTATATCAGATAGCTGGAAATATGGTGCTCATTTTTTCCGAA
ATGAATTTCTGTTAAACTATATCATTGCAACATATAGCAAACCTCAGGTAAGCTGTCGCTATGG
CTTTGAAACTGCTTGTCCACATAATTGTTGTCATTATTGCTCAATTCTTACCACTGAATGCTAC
AACACTCTTATCTAGGTTTCGCTTCTAACTGGAATTGTCATGGGTGGAGGTGCTGGTGTTTCTA
TACATGGAAGGTTCCGAGTTGTCACAGATAGCACGGTATATATTACGGAACAAACTCTATATGA
ACCTTCCGTTTTTGCTTAAATCATTTCAAAAAGGATGTAGCTGGTGTGCATAAAAAGCTTGTTT
GATTCTTTTCATGGGATAAACAGCTTACCAGCATATGCCTAGAGATTGACTCTGTATTTTTACT
ACTATTTATACAGGTTTTTGCTATGCCAGAAACAGCGTTGGGTCTCTTTCCAGATATTGGGGCT
TCATATTTTCTATCTCGACTTCTTGGGTTCTATGGTGAACTTTTTTCCTATCTCATATCTCCTT
TATTCAATTGAACTTTCACACATGATCATATGAATTCTCATTGCAATGTCTAAAACTGATTATG
AATACTGGAAACCCATGTGCAGTTATGCATCCTTAAATGCTTATTTTTTAGGGAAAATCCAACC
TCAAATCTTGCAAATTTTGGATCACTGGATGTGCTTCACGATTCGTGCTCTTCTCCAACTCCAG
CGACCACCTCTTCTTCTCCGGCGCCAGCGCCGGCGGAACCCAAACTCCGGCAGAGGGCCGACGA
ATTAGGGTCCGGGGTGCGGTGGGGATGGGAGGGGGGGAGGGGTAGGGGAGAAGAGGGGGGAGAG
TTCGCCGGCTTTAGAGGGATGGCCGTGGGAGGCGGTAGCCCGGCGGTGGGCGGCGGATCGGGCG
GGCGGCGAGGTGGCGGCGCCGCCGCCGAAGCCGCGGGGTCGGAAGCTCGCGGTGGGCCGGTGTA
GGAGACGGGGGCAAAGCGGAAGATATGTCAGGAGGAGGCGGCCGGTGGTGGCGCCCCGCAGTCG
GAGACGGGGACGACGGCCGCCATCGGCTTGAGGGAAGAAGAGGACAGGGAGGGGGAGGGGAGGG
CGCCGGCCGGGGGGACCTCGCCTGCGCCGTTGACTCCCTTCGGCCAGCCGGCGAGGCGGGCGGC
GGCGTGTTGGGGCGGTGGCGGCGGCGGATCAGGTGGTGGCGAGATGGGCGCGCGAGGGGAGCGG
CGGCGGCGGAATGCGCGAGGGGGAGAGGAATGGGAGAAAAAAGGTTAGGGTTAAGGCTGTGCAC
GAATCTCAAAGCATATCCAATGGTCCAAAATTTGAAAGATTGGAGGTGGGATATTCTATCAACA
GATGTATAAACAGTCCCTATTTTTTATTTAGGATGATCATATTATTACATGATTTTAAAATTTG
TGGGTGTGGAAATATATATGGCCACTCTGTTTCTCCCATCATCTTAATAAATTTTGGTAAAAAC
AAGAAATGTATGTGGCCAGATTTTTTATTGCCTGTCCACAGGATTCATCTGTTGAATTTTAATA
TAATGGTGAATTTGTTATAATTACACCATACAAAGTTATAATTTGATGGGAAACTATCATTGGA
GATCGTTTTCACTGATTTTTTGTTATGTCTTTCTCAGGAGAGTATGTTGGTCTTACTGGTGTAA
GGTTGGATGCTGCTGAAATGCTTGCTTGTGGCCTAGCAACTCATTTTGTACCTTCAGATGTAGG
TCTGCCAGTGGCTTTTGAATTTTATGTTCAGTGTGGGACCACATATTTGTTCGTTTTATGTTTG
GAAGTCAACTGTTATAACATGTCCTACACACTTGACTTGTTCCAAGTGTGATTATAGATAACCC
GAGTATTGCTGGTTTTCTAATTCCTACTAGTACACTCACTCTTGCAGAGGCTGTCTTTGCTAGA
AGAATCACTTAAAAAGGTTGATACATCTGATCCATTTGCTATATGTGGAATTATCGATCAATAT
TCGCAACAACCATCTCTGAAAGAAAAAAGCGCTCTGAATAG
Conservation Information
Conserved circRNAs osi_circ_006056*
PMCS 0.212991126
Functional Information
Coding potential Y
Potential coding position 9358059-9357986(+)
9358015-9360930(-)
Potential amino acid sequence MITCFLRCFTAYEEDDGVKLLIVKGKGRAFCAGGDVAAVVRSINNDSWKYGAHFFRNEFLLNYI
IATYSKPQVSLLTGIVMGGGAGVSIHGRFRVVTDSTVFAMPETALGLFPDIGASYFLSRLLGFY
GEYVGLTGVRLDAAEMLACGLATHFVPSDRLSLLEESLKKVDTSDPFAICGIIDQYSQQPSLKE
KSALNRFW*(+)
MSVLHHLLLPKPIQSAFFFQRWLLRILIDNSTYSKWIRCINLFK*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017