Detail information of BGIOSGA007804_circ_ag.2


General Information
CircRNA Name BGIOSGA007804_circ_ag.2
ID in PlantcircBase osi_circ_012725
Alias Chr02:6798103_6802964(MH63RS2), Chr02:6798103_6802964(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr2: 7670956-7675788  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ag-circRNA
Identification method CIRCexplorer2, CIRCexplorer2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA007804_circ_igg.1 BGIOSGA007804_circ_ag.1 BGIOSGA007804_circ_ag.2 BGIOSGA007804_circ_ag.3 BGIOSGA007804_circ_ag.4 BGIOSGA007804_circ_ag.5 BGIOSGA007804_circ_g.1 BGIOSGA007805_circ_g.1
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   GT-CA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AATCCTCTTGATTTGCTCCCTCCAAGCAAAATGATCCTCGATGAGTGGAAGAGGTTATACTCAA
ACACAAAAACAAACTTCCGTGAGGTTGCTATCAAGGggtttctgggatatgtatgacccagaag
gttactccctgtggttttgtgactacaaatacaatgacgagaatactgtgtccttcgtgaccat
gaacaagg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTTTCTGGGATATGTATGACCCAGAAGGTTACTCCCTGTGGTTTTGTGACTACAAATACAATG
ACGAGAATACTGTGTCCTTCGTGACCATGAACAAGGTTGGTGGGTTCCTGCAGCGAATGGACCT
GTGCCGCAAATATGCTTTCGGGAAGATGCTTGTGATCGGCTCTGAGCCGCCATTCAAGGTGAAG
GGTCTTTGGCTCTTCCGTGGCCCCGAGATCCCCAAGTTCGTCATGGATGAAGTCTATGACATGG
AGCTCTATGAGTGGACCAAGGTTGACATCTCAGATGAGGCCCAGAAGGAGCGCGTCAGCGCCAT
GATTGAGGACCTGGAGCCATTTGAGGGCGAGTCGTTGCTGGATGCGAAATGCTTCAAGTGAGGC
GTCGTTGGAGCAAGGATACCGTGGAAAATGAGCTATTTAGGTTTTGGATTTACCCTTCTACAAT
AGTTCATGATTATAAAAAAAAAATACTATCACCATGTGGCTATATTAGTCAATATTGAGTGTGC
TGGTCTTTTCTTTTTGTACTGTTTGCTAGAGTTTTGGCCCTTTTTAACCTTGTAGTTAAGTTGT
TAAGACACTTATCCATCGAATCATCGTCAGAAACACACCATTCGAATCTGCTGTTGCTCATGTG
TTAAACTTGCCATTCTGATAATGTTTTGGAAATAGGCAACAAAACGAGTTATGGTGCTGGGTTA
TTTTATGTATTTTATTCTGTTGTTCATGTTTGTTGTGTTTCTTTTTTTTTTCTTTTGCTTTCAG
CGCTGGGCACGCAGACGAAGGCCATGTTCGTTTCTATTGAGATTTTCTTGATTATCTGGTTTGG
TGATGGCTATTTGAGGGTATATAAATGAATGAATGAACGAATTACTATTAATTTAAAATTTTGC
TTTAGAAAAATATTTCCAAGAAACTTCTATTATATAGAAATTTTTTACATGAAACGCATAGCTT
GGTAAGCCGGATAATAATCTCCTGAATCAAAAATGGGATCTACAACGCATGGATCAGAGATTTG
CGTTTTGTCAATGTGTCAACTTGCCTAAGCATTTGCGGAGTAAATTTAGTGACGTTAAAGAAAG
AAAGGGAAGGAAGGAGAAACAGATAATAAGAGGGACGGATGACAACAGTTCAGAGTTAACGTGG
AAGAAATAGAGGGAATGAAGAAGAAACATCGTTGCTATGCATGACAACGGCTCCTCAGAGTCAA
GTGAAAGAAAGAGAGGGACGCATGACATGACAACGGCTCCTCAGAGTCACGTGAAAGAAAGAGA
TGGAAGGAAGGAGAAACATCGTTGATACGCATGACAACGGCTCAGAGTCGACTCTTAGCATTCA
TTAACGAAAAATTTGTTGCATGAGAGTGGAGAAAAATGAAAGAAGTATAATAAAAATTTATTTA
TGTATTAATGGTTTAGAAAACTTATTGTCTTTATTACTGTAGTACTTCCTCCGTTTACTTTCTA
ACATTGCTCATATTCATATATATATGTTAATGAATCTAGACATATATGTGTGCCTAGATTCACT
AACATCTATATGAATGTGGAGAATGCTAGAAAGTCTTATAACCTGAAACGGAGGTAGTAGGATA
TAGTCTCTAGTAATATTAATTAATATAAAGAGCTCATATTAGACTCTACCTTTATACATGCCTT
AAAATTAACTCACAGCATCACCACCATGCGAACATTAAATCCTCCTTACTCCATTCCGTATTCT
GTAATACTATCTCCTTCCCCTTAATAACGTTGGTCCTTACTCTACTCAGTATTCTGTAATACTA
ATCTCCTTCCCCTTAATAACTTTGGTTAGTTTAATTTTGAGTAAATTATAGGGTGTTTGGTTGT
AGTCACAGTTGTGGCAAGATTCTCTTCCAATAAACGAGTCATATACGTTATTGACTCAAAAAGG
TGTTGCAAGATTTTCTTAGGCTTGCTAAAGTGTGACCAAGAATTTGATCGCCTCAACTTAGACA
AGTGTGGCAATACTTTTGTATGTAGTTTTATGATAAATTAACCTATATATATATAATTTTCTAA
AATTTATTTAATTTTTTTATGGCAAAGAAATGGATTTAATTTTTTTTTTAGAAAAAATGCCCAA
GGCCCGTTTCGATCCAACGGGCTCGACTGGAAGGGGCCAGAGTGCCAGACGAATGCCCGCCTAC
GGAGTGGTTGGATCTGCTCTGCGCCGTCCGATCTGTCGCAAGGCTTACTCATCGGACGGCCGAG
ATCACCCGCGCGCAACCCTAGGCGAGATCGTAAGTAGAATCGGCTGCGTCGAATCCCTCCACTG
TTTTTGCTGCCGCTGCTACTTCTTCCACTAGGGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCT
CGCCTCCGCCACCGTAAGATCTCCCCGATTCGCTACAACTAACTAGTGTGCTTGCGCCATTGTT
GCGTACTGTTGATTTTGCGGAATTTTTTTTAAATTTTTTTGGATTTTTGTTTCCTCATGATGTG
CAGATCTGAAATCGAGTGAGTGGGAGCTAAGGCGGCGGCCCCGTCGAGATGGCGCTCGTAAGTG
ATTCTTGATCTAACCTCGTTTGCTCGTGTTCTTTAGTTGATTTAGTGGAGAAGCTTGGCATGAT
GCGGTGGGGTGTAGTTTTTTTTTTTTTTTTTTCATTTTCAAATTGTAGCATCTGTGGATTGCTG
TATGAGTCTTCTGTAAAGCATATCGTTTTTTTCTGCACGATCAGGGTTGATTTGGTGCGCATTT
CTACCCAGCATTTAGGGAGGGTTTTGGTAGGGTGGTGACAGTTTAGGTGTCACGGATTTTATTT
AGATCGGTGGACAATGTTCGGTCTATGTCTAGCATCTCTTATTTTCTTAATGTTGTCTTGCAAG
CTCGTTGAAATGCAGATTTCTGGTTTTTTTTTTTTTACTTTGTTACTTTCTGGTTCAAATGCTG
GCGGATCAAGTGAATATTAAATAATTTGTGCAGTGAGGAAGCAAGGACCTGCCTTCGAAATTTT
TCTAGTCTATATTTCTGATTATTTGATCCCAAGTGTTAAAGATTGTTGCCAAGGTTTTCCAATA
GTTAGCCTTTCTTATATAATTTTGATGATGTAAGACCAAATTCAAATGCATACAAATGAAAGCC
TGATCACATGACAGTTTGTTGACAATATATACATTATCCTGTAGAGATTTGCACAGGGCTCTGC
TTTCCTAGAACGCTTACAGCTTCCTGTTTGATGCAAATGGGATTATTTGGAGTTTCGGAAATGA
AGGCTTATTCGCTTTCTGAATAGCCGATGAGCATGTAGACATGTCTCATGCAGACATTATAGCT
CAGCACTTGTGCACATAATTATATAATATGTATGTATTGACCATCACTCTGTAGAACATTGAAT
GGCTAAAGTCACTGTGTAATATGTGCTGCTTGATCTATGAATTTGTCCCGTTGTTTGTATATTT
TTTGTTTATCATGTTTGTGTATCCATCCTTATGGACATGCTAGTCAAACTGTCCTTGTAGTGTT
GTCATGTCATGCACTTCCCTAACCTATTTTCACGCTCAACTTTGTAACTTGCATTGGTGTAGGT
ATTGCATACTTTCGATGGAAACAAGAATGCATTCAAGGCACTCATTGCTGCCGAGTACTCTGGT
GTCAAGGTTGAGTTGGCAAAGAACTTTCAGATGGGTGTCTCCAACAAGACTCCTGAGTATCTCA
AGATGAATCCTATTGGGAAGGTTTGAGCAAAACCACCTCTGAATTTTGGTACATTTGCACAGAA
TCTGATTTGGACACGTTTCCTTTCAGGTCCCTATTCTAGAGACTCCTGATGGTCCTGTTTTTGA
AAGCAATGTGATTGCACGATATGGTAAGTGATACATAGCAAGGATTCCGTTCTTTTAATCCTTT
TCTCTCTATTGCTTGATTTAGTTCTAAGTTCCTCTCATTTTCCTGAAGTTACTCGCTCGAAGTC
TGACAACCCACTCTATGGGTCTTCACTGATTGAATATGTGAGTGATCTTTCATAAATATTTAGG
ATCATTCTTGATTATTTTCCAGCTCCTAGAATTTTGTGTTTCTTTCAGGTTGATCTTTCATAGA
CATTTAGGATCATTCTTGATTATTTTACCAGCTCCTTGAATTTCTTGTTTCTTTCAGGCCCACA
TTGAGCAGTGGATTGACTTTTCAGCCACAGAGGTTGATGCTAATACTGGAAAATGGCTCTTCCC
ACGGCTTGGATTTGCTCCTTATGTTGCTGTCGTAAGTATGGTCAAGTGGGTATCGTTGTGTTCT
CCTTGTTAGCAATTTGTGATCTAATCTTGTTTCTGCCTAACAGAGTGAGGAAGCAGCTATTGCT
GCTTTGAAGAGATCATTGGGTGCCCTCAACACACACCTTGCATCAAACACATACCTTGTTGGCC
ATTCAGTGACTCTTGCTGATATTGTGATGACATGCAACCTCTACATGGGCTTTGCTCGGATCAT
GACCAAGAATTTTACTTCTGAGTTCCCTCATGTTGAGAGGTACTTCTGGACCATGGTTAACCAG
CCAAACTTTAAGAAAGTCATGGGTGATGTGAAGCAGGCAGATTCTGTCCCACAAGTTCAAAAGA
AGGCTGCAGCACCAAAGGAGCAGAAGCCAAAGGAAGCCAAGAAAGAGGCCCCAAAAGAAGCTCC
AAAGCCTAAGGCAGCTGAGAAACCAGAGGAGGAAGAGGAAGCACCAAAGCCAAAGCCAAAGAAT
CCTCTTGATTTGCTCCCTCCAAGCAAAATGATCCTCGATGAGTGGAAGAGGTTATACTCAAACA
CAAAAACAAACTTCCGTGAGGTTGCTATCAAGG
Conservation Information
Conserved circRNAs osa_circ_013899
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021