Detail information of BGIOSGA007804_circ_ag.2


General Information
CircRNA Name BGIOSGA007804_circ_ag.2
ID in PlantcircBase osi_circ_012721
Alias Chr02:6796980_6801994(MH63RS2), Chr02:6796980_6801994(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr2: 7669835-7674818  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ag-circRNA
Identification method CIRCexplorer2, CIRCexplorer2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA007804_circ_igg.1 BGIOSGA007804_circ_ag.1 BGIOSGA007804_circ_ag.3 BGIOSGA007804_circ_ag.4 BGIOSGA007804_circ_ag.5 BGIOSGA007804_circ_g.1 BGIOSGA007804_circ_ag.2 BGIOSGA007805_circ_g.1
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   GT-AA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CATTTGCACAGAATCTGATTTGGACACGTTTCCTTTCAGGTCCCTATTCTAGAGACTCCTGATG
GTCCTGTTTTTGAAAGCAATGTGATTGCACGATATGgttacccgctcgaaggctgacaacccac
tctatgggtcttcactgattgaatatgtgagtggtcttccatagatatttaagatcattcttga
ttatttta
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTACCCGCTCGAAGGCTGACAACCCACTCTATGGGTCTTCACTGATTGAATATGTGAGTGGTC
TTCCATAGATATTTAAGATCATTCTTGATTATTTTACGAGCTTCTAGAATTGTATGTTTCTTCC
AGGCCCACATCGAGCAGTGGAATGACTTTTCGGCCACAGAGGTTGATGCTAATATTGGAAAATG
GCTCTACCCACGGCTAGGAATTGCTCCCTATGTTGCTGTGGTAAGTATGGTCAAGTGGGTGTCA
TAGTGTTTTCCTTGTGTCAGCAATTTGTTGTCTAATCTTATTTCTGCCCAACAGAGTGAGGAAG
CAGCTATTGCTGCTTTGAAGAGATCATTGGGTGCCCTCAACACACACCTTGCATCAAACACATA
CCTTGTTGGCCATTCGGTGACTCTTGCTGATATTGTGATGACCTGTAACCTCTACATGGGCTTT
GCTCGGATCATGACCAAGAGTTTTACTTCTGAGTTCCCTCATGTTGAGAGGTACTTCTGGACCA
TGGTTAATCAGCCAAACTTTAAGAAAGTCTTGGGTGATGTGAAGCAGGCAGAGTCTGTCCCACC
AGTTCAAAAGAAGGCTCCACCACCAAAGGAGCAGAAGCCAAAGGAAGCCAAGAAAGAGGCTCCA
AAACCTAAGGCAGTTGAGAAACCAGAGGAGGAAGAGGAGGCACCAAAGCCAAAGCCAAAGAACC
CTCTTGATTTGCTCCCTCCAAGCAAGATGATCCTTGATGAGTGGAAGAGGTTATACTCAAACAC
AAAAACAAATTTCCGTGAGGTTGCTATCAAGGGTAAGTTTCTTTTGGGAATCTAGTAGTCACTA
AAAGGTTTCCACGTAGAAAAGTATAGTTTCTTTTGGGAATCTAGTAGTCACTAAAAAGGTTTCC
ACAGAAAAGTTTACTACATTGCTGTGAGTACACTAGAAAGATATGAGTACAAATTGGCTTACAA
ATTATAACAGCTACTAAAGAGTCAATGCAAATTTGTTTGTTGACCTGTCAACTGTTAGCAAGTT
ATATCTCTTTGATTACCATTATTTGTCATCTGCTCCCAACTTCTGTTGTGTATGAAGTTCTGTG
AATTGAACTCAACATGTCTTCTCACTTATTGCAGGTTTCTGGGATATGTATGACCCAGAAGGTT
ACTCCCTGTGGTTTTGTGACTACAAATACAATGACGAGAATACTGTGTCCTTCGTGACCATGAA
CAAGGTTGGTGGGTTCCTGCAGCGAATGGACCTGTGCCGCAAATATGCTTTCGGGAAGATGCTT
GTGATCGGCTCTGAGCCGCCATTCAAGGTGAAGGGTCTTTGGCTCTTCCGTGGCCCCGAGATCC
CCAAGTTCGTCATGGATGAAGTCTATGACATGGAGCTCTATGAGTGGACCAAGGTTGACATCTC
AGATGAGGCCCAGAAGGAGCGCGTCAGCGCCATGATTGAGGACCTGGAGCCATTTGAGGGCGAG
TCGTTGCTGGATGCGAAATGCTTCAAGTGAGGCGTCGTTGGAGCAAGGATACCGTGGAAAATGA
GCTATTTAGGTTTTGGATTTACCCTTCTACAATAGTTCATGATTATAAAAAAAAAATACTATCA
CCATGTGGCTATATTAGTCAATATTGAGTGTGCTGGTCTTTTCTTTTTGTACTGTTTGCTAGAG
TTTTGGCCCTTTTTAACCTTGTAGTTAAGTTGTTAAGACACTTATCCATCGAATCATCGTCAGA
AACACACCATTCGAATCTGCTGTTGCTCATGTGTTAAACTTGCCATTCTGATAATGTTTTGGAA
ATAGGCAACAAAACGAGTTATGGTGCTGGGTTATTTTATGTATTTTATTCTGTTGTTCATGTTT
GTTGTGTTTCTTTTTTTTTTCTTTTGCTTTCAGCGCTGGGCACGCAGACGAAGGCCATGTTCGT
TTCTATTGAGATTTTCTTGATTATCTGGTTTGGTGATGGCTATTTGAGGGTATATAAATGAATG
AATGAACGAATTACTATTAATTTAAAATTTTGCTTTAGAAAAATATTTCCAAGAAACTTCTATT
ATATAGAAATTTTTTACATGAAACGCATAGCTTGGTAAGCCGGATAATAATCTCCTGAATCAAA
AATGGGATCTACAACGCATGGATCAGAGATTTGCGTTTTGTCAATGTGTCAACTTGCCTAAGCA
TTTGCGGAGTAAATTTAGTGACGTTAAAGAAAGAAAGGGAAGGAAGGAGAAACAGATAATAAGA
GGGACGGATGACAACAGTTCAGAGTTAACGTGGAAGAAATAGAGGGAATGAAGAAGAAACATCG
TTGCTATGCATGACAACGGCTCCTCAGAGTCAAGTGAAAGAAAGAGAGGGACGCATGACATGAC
AACGGCTCCTCAGAGTCACGTGAAAGAAAGAGATGGAAGGAAGGAGAAACATCGTTGATACGCA
TGACAACGGCTCAGAGTCGACTCTTAGCATTCATTAACGAAAAATTTGTTGCATGAGAGTGGAG
AAAAATGAAAGAAGTATAATAAAAATTTATTTATGTATTAATGGTTTAGAAAACTTATTGTCTT
TATTACTGTAGTACTTCCTCCGTTTACTTTCTAACATTGCTCATATTCATATATATATGTTAAT
GAATCTAGACATATATGTGTGCCTAGATTCACTAACATCTATATGAATGTGGAGAATGCTAGAA
AGTCTTATAACCTGAAACGGAGGTAGTAGGATATAGTCTCTAGTAATATTAATTAATATAAAGA
GCTCATATTAGACTCTACCTTTATACATGCCTTAAAATTAACTCACAGCATCACCACCATGCGA
ACATTAAATCCTCCTTACTCCATTCCGTATTCTGTAATACTATCTCCTTCCCCTTAATAACGTT
GGTCCTTACTCTACTCAGTATTCTGTAATACTAATCTCCTTCCCCTTAATAACTTTGGTTAGTT
TAATTTTGAGTAAATTATAGGGTGTTTGGTTGTAGTCACAGTTGTGGCAAGATTCTCTTCCAAT
AAACGAGTCATATACGTTATTGACTCAAAAAGGTGTTGCAAGATTTTCTTAGGCTTGCTAAAGT
GTGACCAAGAATTTGATCGCCTCAACTTAGACAAGTGTGGCAATACTTTTGTATGTAGTTTTAT
GATAAATTAACCTATATATATATAATTTTCTAAAATTTATTTAATTTTTTTATGGCAAAGAAAT
GGATTTAATTTTTTTTTTAGAAAAAATGCCCAAGGCCCGTTTCGATCCAACGGGCTCGACTGGA
AGGGGCCAGAGTGCCAGACGAATGCCCGCCTACGGAGTGGTTGGATCTGCTCTGCGCCGTCCGA
TCTGTCGCAAGGCTTACTCATCGGACGGCCGAGATCACCCGCGCGCAACCCTAGGCGAGATCGT
AAGTAGAATCGGCTGCGTCGAATCCCTCCACTGTTTTTGCTGCCGCTGCTACTTCTTCCACTAG
GGTTCGTCTTGCTGCTCCCTCCACTGCTCGCCTCGCCTCCGCCACCGTAAGATCTCCCCGATTC
GCTACAACTAACTAGTGTGCTTGCGCCATTGTTGCGTACTGTTGATTTTGCGGAATTTTTTTTA
AATTTTTTTGGATTTTTGTTTCCTCATGATGTGCAGATCTGAAATCGAGTGAGTGGGAGCTAAG
GCGGCGGCCCCGTCGAGATGGCGCTCGTAAGTGATTCTTGATCTAACCTCGTTTGCTCGTGTTC
TTTAGTTGATTTAGTGGAGAAGCTTGGCATGATGCGGTGGGGTGTAGTTTTTTTTTTTTTTTTT
TCATTTTCAAATTGTAGCATCTGTGGATTGCTGTATGAGTCTTCTGTAAAGCATATCGTTTTTT
TCTGCACGATCAGGGTTGATTTGGTGCGCATTTCTACCCAGCATTTAGGGAGGGTTTTGGTAGG
GTGGTGACAGTTTAGGTGTCACGGATTTTATTTAGATCGGTGGACAATGTTCGGTCTATGTCTA
GCATCTCTTATTTTCTTAATGTTGTCTTGCAAGCTCGTTGAAATGCAGATTTCTGGTTTTTTTT
TTTTTACTTTGTTACTTTCTGGTTCAAATGCTGGCGGATCAAGTGAATATTAAATAATTTGTGC
AGTGAGGAAGCAAGGACCTGCCTTCGAAATTTTTCTAGTCTATATTTCTGATTATTTGATCCCA
AGTGTTAAAGATTGTTGCCAAGGTTTTCCAATAGTTAGCCTTTCTTATATAATTTTGATGATGT
AAGACCAAATTCAAATGCATACAAATGAAAGCCTGATCACATGACAGTTTGTTGACAATATATA
CATTATCCTGTAGAGATTTGCACAGGGCTCTGCTTTCCTAGAACGCTTACAGCTTCCTGTTTGA
TGCAAATGGGATTATTTGGAGTTTCGGAAATGAAGGCTTATTCGCTTTCTGAATAGCCGATGAG
CATGTAGACATGTCTCATGCAGACATTATAGCTCAGCACTTGTGCACATAATTATATAATATGT
ATGTATTGACCATCACTCTGTAGAACATTGAATGGCTAAAGTCACTGTGTAATATGTGCTGCTT
GATCTATGAATTTGTCCCGTTGTTTGTATATTTTTTGTTTATCATGTTTGTGTATCCATCCTTA
TGGACATGCTAGTCAAACTGTCCTTGTAGTGTTGTCATGTCATGCACTTCCCTAACCTATTTTC
ACGCTCAACTTTGTAACTTGCATTGGTGTAGGTATTGCATACTTTCGATGGAAACAAGAATGCA
TTCAAGGCACTCATTGCTGCCGAGTACTCTGGTGTCAAGGTTGAGTTGGCAAAGAACTTTCAGA
TGGGTGTCTCCAACAAGACTCCTGAGTATCTCAAGATGAATCCTATTGGGAAGGTTTGAGCAAA
ACCACCTCTGAATTTTGGTACATTTGCACAGAATCTGATTTGGACACGTTTCCTTTCAGGTCCC
TATTCTAGAGACTCCTGATGGTCCTGTTTTTGAAAGCAATGTGATTGCACGATATG
Conservation Information
Conserved circRNAs osa_circ_013895
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021