Detail information of BGIOSGA006435_circ_g.20


General Information
CircRNA Name BGIOSGA006435_circ_g.20
ID in PlantcircBase osi_circ_003942
Alias 2:18746037|18748221
Organism Oryza sativa ssp. indica
Position chr2: 18746037-18748221  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA006435
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA006435_circ_g.1 BGIOSGA006435_circ_g.2 BGIOSGA006435_circ_g.3 BGIOSGA006435_circ_g.4 BGIOSGA006435_circ_g.5 BGIOSGA006435_circ_g.6 BGIOSGA006435_circ_g.7 BGIOSGA006435_circ_g.8 BGIOSGA006435_circ_g.9 BGIOSGA006435_circ_g.10 BGIOSGA006435_circ_g.11 BGIOSGA006435_circ_g.12 BGIOSGA006435_circ_g.13 BGIOSGA006435_circ_g.14 BGIOSGA006435_circ_g.15 BGIOSGA006435_circ_g.16 BGIOSGA006435_circ_g.17 BGIOSGA006435_circ_g.18 BGIOSGA006435_circ_g.19 BGIOSGA006435_circ_g.21
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered BGIOSGA006435-TA:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AACCTATATAGAAATTCTTACCTTCATTACTAGCAAATATCGAACTATTTCCACCCGTGAAATA
ATTAAGCAGCCCTTTGGGAGATACAAACTGCATGGCctttctgtgaccttcacctgatatttgt
gctaaaaccttcccgttgggcccaatcacaacaaatgtaggccaagagttcacccccagttctc
tccacaag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTTCTGTGACCTTCACCTGATATTTGTGCTAAAACCTTCCCGTTGGGCCCAATCACAACAAAT
GTAGGCCAAGAGTTCACCCCCAGTTCTCTCCACAAGTACATGTCCCCATCATTTACAACCTTAA
GAAAGACCATAGCTTTAAAAAGTTAAGAACACCACAAAAAAGCAATAGACATGAAAGTCTATGC
CAGGGAGGAGCACAGGAATGATGTTTCTCATTTCAACATTTCACAAGTTATCACAGCTGTATTA
CCGGATGAGTAATGTTGTAGCGCAGAACAGCATTTCTGATGGCTTCAAGATCTTTTTCATTATC
AAATTTGGCAGAGTGCACACCGACAACAGTGAACTGCACAGGAACAAGCAACATTATGTAAATA
TCAAGAAATCTTCAAATCATACCAGTTTCATCAATGAGAGACAGTGTTGCAGCAAAATTTCACA
TTATGGCTCGATCATGTATTATATACTTATATTCAAATTGCAGGTGCCATGAGCAGATCCATCT
AATTCCTAAACATAATATCCATGATTTATAACTTACAGATGTAAGAACTAAGAATATTGGATGA
GTGTAAACATGTGAGCTTATAAGGACGGAACTATACTACCAACTTTTTTTTTTTAGAACACGCA
GGAGATCTGCGTATCATTTCATTAAGATAGAGAAGAAAAGATGAACGGTGTTAGAGAAAGACTC
CGACACCCGTCCACCAAGGATACAACAGAACACCACACACCCAAAGGAACACCACACAAAACAC
ACTAGTGCATTAGCAGCCCAATCCTAGTACTACCAACTTCACAAGTTGATTTTTTTGTGATGGT
GAATTATAATAAATTACAAGTTTTTACAGCTCAGTTCAGAGGATCTACAGTACAATATTTTGAG
GAAAACTCAGTTTCAGGACTAACGAATCACCATATGATCAGTAGAGAGTAGTTAGGAGAAAAGG
AACATGAAAAAAAAAACATCATTAGAAATAAAATTAAGATTAGCATCGTCAAAATTTACGGCGC
AGAAATACTGCAGTTATAATATATCAGAACAAATGTTAAGTAGCAAAGTTATAAATCATTTATT
GATTCCAACCTAAAGCTCTTGAAAGAAAACTAAACATACAGTCCAGCATGCGAGGAGACAGAAG
CTCACAGGTTTATCCTTGTACTTCTTCTCTATAAATTCCAGGTCGGGCAAGACATGCATGCAAT
TGATGCAGCAATAGGTCCAAAAATCCAACAGGACCACTCTTCCTTTTAAATCCTGCACCAAAAA
TTATGTAATTGCTTTAAGTGATAATGCTATATTTCCACGGACCTAAATTATGAAGCAGAAAATA
AACGAAAACAAATTGTCATTCGCCAATCATCATATCTGTATACAGCTGAAAATCAACCCAACTG
AAAATGGTGCCTTGTCTTGAACAGGAATAAAGAAAAGGGAAACAATCGGTACTGTAGCAAAGTT
GCAGCTACTGAAGAATAACCTAAAATGAGTTTAAATTACTCTTCCAAACTGAAGTGGCGCTGTA
TTCAACCAATCAAGCTTTCTTGGGAACTCAGGTACACAAGTAGCAGAACCTCTGAGGAAACAGT
TTGGAAGTAAATTAGTGCTTCAGTAAAAATAAAAATCAACCTCAGCAGAGCATTAGACCTTGAA
AATTGATGAACATGTACTTAGTTACCTACCCAGTTTCAAAATCAGCTAAATACTTCTTTATTTG
TTGAACCCTTGATGTGAGTTGTTCTCCTATAGAAACAAGGCAGAGTGTGCAGTATGTAAGAGAA
AAGATTGTGAATCGAATCAAAAGTCCAAGGCCAATCTTTAATTAGTTTTGGATCCGATTTCTTC
CAAGCTAGTTTCACTGTAGTACTCACCAAAGTTGACTAGCAAATCTAGTCTAACGGACTAAAAT
GAAGCTGCCATATAATGCCAGATGGAACAAAAAAAATATGTAGCATCAAATCTCACATAACACC
CCATGGTCTTTTTTCAGCACAAATCAAATCAAGTTACTGACCCGGATGATTAGCCAGGATTGAT
TGATTATTCAAATTATTCATTAAAAATGAACATACAGAACCTATATAGAAATTCTTACCTTCAT
TACTAGCAAATATCGAACTATTTCCACCCGTGAAATAATTAAGCAGCCCTTTGGGAGATACAAA
CTGCATGGC
Conservation Information
Conserved circRNAs osa_circ_019495
PMCS
Functional Information
Coding potential Y
Potential coding position 18748220-18746039(-)
Potential amino acid sequence MQFVSPKGLLNYFTGGNSSIFASNEGEQLTSRVQQIKKYLADFETGGSATCVPEFPRKLDWLNT
APLQFGRDLKGRVVLLDFWTYCCINCMHVLPDLEFIEKKYKDKPFTVVGVHSAKFDNEKDLEAI
RNAVLRYNITHPVVNDGDMYLWRELGVNSWPTFVVIGPNGKVLAQISGEGHRKAMQFVSPKGLL
NYFTGGNSSIFASNEGEQLTSRVQQIKKYLADFETGGSATCVPEFPRKLDWLNTAPLQFGRDLK
GRVVLLDFWTYCCINCMHVLPDLEFIEKKYKDKPFTVVGVHSAKFDNEKDLEAIRNAVLRYNIT
HPVVNDGDMYLWRELGVNSWPTFVVIGPNGKVLAQISGEGHRKAMQFVSPKGLLNYFTGGNSSI
FASNEGEQLTSRVQQIKKYLADFETGGSATCVPEFPRKLDWLNTAPLQFGRDLKGRVVLLDFWT
YCCINCMHVLPDLEFIEKKYKDKPFTVVGVHSAKFDNEKDLEAIRNAVLRYNITHPVVNDGDMY
LWRELGVNSWPTFVVIGPNGKVLAQISGEGHRKAMQFVSPKGLLNYFTGGNSSIFASNEGEQLT
SRVQQIKKYLADFETGGSATCVPEFPRKLDWLNTAPLQFGRDLKGRVVLLDFWTYCCINCMHVL
PDLEFIEKKYKDKPFTVVGVHSAKFDNEKDLEAIRNAVLRYNITHPVVNDGDMYLWRELGVNSW
PTFVVIGPNGKVLAQISGEGHRK(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021