Detail information of Os11g0533100_circ_g.1


General Information
CircRNA Name Os11g0533100_circ_g.1
ID in PlantcircBase osa_circ_009489
Alias NA
Organism Oryza sativa
Position chr11: 19422692-19428695  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method CIRCexplorer
Parent gene Os11g0533100
Parent gene annotation Similar to CarD-like transcriptional regulator family protein, e
xpressed. (Os11t0533100-01)
Parent gene strand -
Alternative splicing Os11g0533100_circ_g.2 Os11g0533100_circ_g.3 Os11g0533100_circ_g.4 Os11g0533100_circ_g.5 Os11g0533100_circ_g.6 Os11g0533100_circ_g.7
Support reads 2
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os11t0533100-01:12
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCTTCCCTTTCAGTCTTCTCTTCTCCCACGTGGAAGGATCGTTCAGTTTGCTCAAATTCCGTGG
TCTCTGCTTCTCGTGAGGTCTGCAGGAAACATCAATcttaatttcctttccagtgaatgataag
gaatttcgatgagtctccaaagacattgcttctctcatgagccgaaataccttcttgttcatgt
ttgttttc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1785
Transcript exons: 19422692-19422877,19422976-19423146,19423262-19423306,19
424010-19424183,19424724-19424810,19425272-19425433,1942
5868-19425938,19426219-19426358,19426751-19426875,194272
52-19427386,19427992-19428237,19428453-19428695
CTTAATTTCCTTTCCAGTGAATGATAAGGAATTTCGATGAGTCTCCAAAGACATTGCTTCTCTC
ATGAGCCGAAATACCTTCTTGTTCATGTTTGTTTTCATGATGATCATTTTGCCAGATGAATATA
TCCTACTGATACCAAGATCTGCTGCCATCCGTCTTACATAGAGCTTTTTCAATAGCAACTCCAT
ATCACGAGGCTCCTTTCCATATTGTCGACGAAGATCTTCTGTGAATTGTATTAAGGTCCATAGG
TCTTTCTCTGCAGCTTTTGCAGCTTCGTTAAGCAATTCCACCGGATTTTCAAGGTAACTTATGT
ATTCAGAGGAGAGACGTGAAGAAATGTTTATATCCAGCTGAACATCTTTGTAAGGGACGGGAAT
AAGACAAAACTGATCAACCTTTGACAAGCTATCAAAAAGCATATCAAAGAATAGATCAATGCCA
ACATTTGCAACATCTCCAGATTGTTGCTCACCAAACAAGCTTCCGAACCCCCTGATACCCATAT
CCTTCTCTGCAACATGGAAACCTTGACCAAGATCTGAATGCTCCTCAATAGCTCCAAGTCTATC
CGTTGCAATCTTTGAGAGCAAAGACTTATCAGTGTAGAAGAGGTATGCGAAACCTTCTGTGCCG
GATCTTCCTACTCTACCTCGCAACTGATATAGCTGTGCAAGCCCAAATAGTTCAGCATACTGAA
CTACCATCGTGTTGGCATTTGGAATATCTATTCCACTTTCAATGATGTGTGTGCAGACCAGAAT
TTTGACTTCTCCACAAGCAAATTTTTCCATAGCAAGTTGTATGTTCTTTGAAACTTTCTTTCCA
TGAGCAACAGCCATTGGAACATCTGGAAGAGAATCCTTGAGAAATTGCAGCACATCATCTATTG
CTTTTATTCGAGGAACAACATAGAAAACTTGACCACCACGTGCCAACTCAAACTTAATAGCTGA
TAGAGCCCTTTCTTTGCTAAATCCTGACACGTAGGTCCTTACAGCAACTCTTTCTGGAGGCGGC
GTAGACATTAAACTGGCATCACGGAAACCTGTCAACGCGAGATACAAAGTACGTGGAATGGGTG
TTGCAGACAGTGTGAGAACATCAATAGAAGCCTTGTATGATGCAATCTTCTCCTTTTGTTGGAC
ACCAAACTTCTGTTCTTCATCCACCACTAGGAGACCAAGATTGTTATATGCCATACGTTCTGTA
AGAACAGCATGAGTTCCAACAATAATATGCAAATCACCATTCCTTATCTTTGTTATTAGCTCAT
CTTTTTCTTCTTTGGTCTGAGCACCACTAAACATGGCAACCTTAATATCAGGATAATTGGAGAA
ACGCTCAGACATTACATCATAATGTTGCTTGGCTAGTATTACAGTTGGAGCAAGAACCATAGCT
TGAAATCCAGCAGATATAACAATGAATATAGCACGCATTGCAACTTCAGTTTTACCAAACCCAA
CATCTCCACAAATCAATCTGTCCATTGGGGTTTCCCTTTCAGTCAGATCTTTGTCAACATCTAT
AAAAGCCTGGTTTTGGTCTGGAGTGGGCTCATAGGGAAATTCAGCAGTAAACTGATCCATTCCC
ACAGGCTTCGGGTAAGGAGGCCTTTTCTGCCTCATCCTTTGTAAATACAACTCCATCAAATTGA
CTACCATTTTCTGAACAGCAAGCTTCCCTTTCAGTCTTCTCTTCTCCCACGTGGAAGGATCGTT
CAGTTTGCTCAAATTCCGTGGTCTCTGCTTCTCGTGAGGTCTGCAGGAAACATCAAT

Genomic sequence TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.
Conservation Information
Conserved circRNAs NA
PMCS 0.214801455
Functional Information
Coding potential Y
Potential coding position 19428583-19422694(-)
Potential amino acid sequence MVVNLMELYLQRMRQKRPPYPKPVGMDQFTAEFPYEPTPDQNQAFIDVDKDLTERETPMDRLIC
GDVGFGKTEVAMRAIFIVISAGFQAMVLAPTVILAKQHYDVMSERFSNYPDIKVAMFSGAQTKE
EKDELITKIRNGDLHIIVGTHAVLTERMAYNNLGLLVVDEEQKFGVQQKEKIASYKASIDVLTL
SATPIPRTLYLALTGFRDASLMSTPPPERVAVRTYVSGFSKERALSAIKFELARGGQVFYVVPR
IKAIDDVLQFLKDSLPDVPMAVAHGKKVSKNIQLAMEKFACGEVKILVCTHIIESGIDIPNANT
MVVQYAELFGLAQLYQLRGRVGRSGTEGFAYLFYTDKSLLSKIATDRLGAIEEHSDLGQGFHVA
EKDMGIRGFGSLFGEQQSGDVANVGIDLFFDMLFDSLSKVDQFCLIPVPYKDVQLDINISSRLS
SEYISYLENPVELLNEAAKAAEKDLWTLIQFTEDLRRQYGKEPRDMELLLKKLYVRRMAADLGI
SRIYSSGKMIIMKTNMNKKVFRLMREAMSLETHRNSLSFTGKEIKIDVSCRPHEKQRPRNLSKL
NDPSTWEKRRLKGKLAVQKMVVNLMELYLQRMRQKRPPYPKPVGMDQFTAEFPYEPTPDQNQAF
IDVDKDLTERETPMDRLICGDVGFGKTEVAMRAIFIVISAGFQAMVLAPTVILAKQHYDVMSER
FSNYPDIKVAMFSGAQTKEEKDELITKIRNGDLHIIVGTHAVLTERMAYNNLGLLVVDEEQKFG
VQQKEKIASYKASIDVLTLSATPIPRTLYLALTGFRDASLMSTPPPERVAVRTYVSGFSKERAL
SAIKFELARGGQVFYVVPRIKAIDDVLQFLKDSLPDVPMAVAHGKKVSKNIQLAMEKFACGEVK
ILVCTHIIESGIDIPNANTMVVQYAELFGLAQLYQLRGRVGRSGTEGFAYLFYTDKSLLSKIAT
DRLGAIEEHSDLGQGFHVAEKDMGIRGFGSLFGEQQSGDVANVGIDLFFDMLFDSLSKVDQFCL
IPVPYKDVQLDINISSRLSSEYISYLENPVELLNEAAKAAEKDLWTLIQFTEDLRRQYGKEPRD
MELLLKKLYVRRMAADLGISRIYSSGKMIIMKTNMNKKVFRLMREAMSLETHRNSLSFTGKEIK
IDVSCRPHEKQRPRNLSKLNDPSTWEKRRLKGKLAVQKMVVNLMELYLQRMRQKRPPYPKPVGM
DQFTAEFPYEPTPDQNQAFIDVDKDLTERETPMDRLICGDVGFGKTEVAMRAIFIVISAGFQAM
VLAPTVILAKQHYDVMSERFSNYPDIKVAMFSGAQTKEEKDELITKIRNGDLHIIVGTHAVLTE
RMAYNNLGLLVVDEEQKFGVQQKEKIASYKASIDVLTLSATPIPRTLYLALTGFRDASLMSTPP
PERVAVRTYVSGFSKERALSAIKFELARGGQVFYVVPRIKAIDDVLQFLKDSLPDVPMAVAHGK
KVSKNIQLAMEKFACGEVKILVCTHIIESGIDIPNANTMVVQYAELFGLAQLYQLRGRVGRSGT
EGFAYLFYTDKSLLSKIATDRLGAIEEHSDLGQGFHVAEKDMGIRGFGSLFGEQQSGDVANVGI
DLFFDMLFDSLSKVDQFCLIPVPYKDVQLDINISSRLSSEYISYLENPVELLNEAAKAAEKDLW
TLIQFTEDLRRQYGKEPRDMELLLKKLYVRRMAADLGISRIYSSGKMIIMKTNMNKKVFRLMRE
AMSLETHRNSLSFTGKEIKIDVSCRPHEKQRPRNLSKLNDPSTWEKRRLKGKLAVQKMVVNLME
LYLQRMRQKRPPYPKPVGMDQFTAEFPYEPTPDQNQAFIDVDKDLTERETPMDRLICGDVGFGK
TEVAMRAIFIVISAGFQAMVLAPTVILAKQHYDVMSERFSNYPDIKVAMFSGAQTKEEKDELIT
KIRNGDLHIIVGTHAVLTERMAYNNLGLLVVDEEQKFGVQQKEKIASYKASIDVLTLSATPIPR
TLYLALTGFRDASLMSTPPPERVAVRTYVSGFSKERALSAIKFELARGGQVFYVVPRIKAIDDV
LQFLKDSLPDVPMAVAHGKKVSKNIQLAMEKFACGEVKILVCTHIIESGIDIPNANTMVVQYAE
LFGLAQLYQLRGRVGRSGTEGFAYLFYTDKSLLSKIATDRLGAIEEHSDLGQGFHVAEKDMGIR
GFGSLFGEQQSGDVANVGIDLFFDMLFDSLSKVDQFCLIPVPYKDVQLDINISSRLSSEYISYL
ENPVELLNEAAKAAEKDLWTLIQFTEDLRRQYGKEPRDMELLLKKLYVRRMAADLGISRIYSSG
KMIIMKTNMNKKVFRLMREAMSLETHRNSLSFTGKEIK(-)
Sponge-miRNAs osa-miR5339
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017