Plant Circular RNA Database

Detail information of Os11g0533100_circ_g.7

			
						 General Information
					
						CircRNA Name
						Os11g0533100_circ_g.7
					
						ID in PlantcircBase
						osa_circ_009495
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr11: 19426751-19428695  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							ue-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os11g0533100						
					
						Parent gene annotation
						
							Similar to CarD-like transcriptional regulator family protein, e
xpressed. (Os11t0533100-01)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os11g0533100_circ_g.1 Os11g0533100_circ_g.2 Os11g0533100_circ_g.3 Os11g0533100_circ_g.4 Os11g0533100_circ_g.5 Os11g0533100_circ_g.6 						
					
						Support reads
						1
					
						Tissues
						shoot
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os11t0533100-01:4

General Information
CircRNA Name	Os11g0533100_circ_g.7
ID in PlantcircBase	osa_circ_009495
Alias	NA
Organism	Oryza sativa
Position	chr11: 19426751-19428695 JBrowse»
Reference genome	IRGSP-1.0.38
Type	ue-circRNA
Identification method	CIRCexplorer
Parent gene	Os11g0533100
Parent gene annotation	Similar to CarD-like transcriptional regulator family protein, e xpressed. (Os11t0533100-01)
Parent gene strand	-
Alternative splicing	Os11g0533100_circ_g.1 Os11g0533100_circ_g.2 Os11g0533100_circ_g.3 Os11g0533100_circ_g.4 Os11g0533100_circ_g.5 Os11g0533100_circ_g.6
Support reads	1
Tissues	shoot
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os11t0533100-01:4

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GCTTCCCTTTCAGTCTTCTCTTCTCCCACGTGGAAGGATCGTTCAGTTTGCTCAAATTCCGTGG
TCTCTGCTTCTCGTGAGGTCTGCAGGAAACATCAATctggcatcacggaaacctgtcaacgcga
gatacaaagtacgtggaatgggtgttgcagacagtgtgagaacatcaatagaagccttgtatga
tgcaatct

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 749
Transcript exons: 19426751-19426875,19427252-19427386,19427992-19428237,19
428453-19428695
CTGGCATCACGGAAACCTGTCAACGCGAGATACAAAGTACGTGGAATGGGTGTTGCAGACAGTG
TGAGAACATCAATAGAAGCCTTGTATGATGCAATCTTCTCCTTTTGTTGGACACCAAACTTCTG
TTCTTCATCCACCACTAGGAGACCAAGATTGTTATATGCCATACGTTCTGTAAGAACAGCATGA
GTTCCAACAATAATATGCAAATCACCATTCCTTATCTTTGTTATTAGCTCATCTTTTTCTTCTT
TGGTCTGAGCACCACTAAACATGGCAACCTTAATATCAGGATAATTGGAGAAACGCTCAGACAT
TACATCATAATGTTGCTTGGCTAGTATTACAGTTGGAGCAAGAACCATAGCTTGAAATCCAGCA
GATATAACAATGAATATAGCACGCATTGCAACTTCAGTTTTACCAAACCCAACATCTCCACAAA
TCAATCTGTCCATTGGGGTTTCCCTTTCAGTCAGATCTTTGTCAACATCTATAAAAGCCTGGTT
TTGGTCTGGAGTGGGCTCATAGGGAAATTCAGCAGTAAACTGATCCATTCCCACAGGCTTCGGG
TAAGGAGGCCTTTTCTGCCTCATCCTTTGTAAATACAACTCCATCAAATTGACTACCATTTTCT
GAACAGCAAGCTTCCCTTTCAGTCTTCTCTTCTCCCACGTGGAAGGATCGTTCAGTTTGCTCAA
ATTCCGTGGTCTCTGCTTCTCGTGAGGTCTGCAGGAAACATCAAT
						
					

						Genomic sequence
						
							CTGGCATCACGGAAACCTGTCAACGCGAGATACAAAGTACGTGGAATGGGTGTTGCAGACAGTG
TGAGAACATCAATAGAAGCCTTGTATGATGCAATCTTCTCCTTTTGTTGGACACCAAACTTCTG
TTGAAACATAGAGTTTGTGAATATATATAAAATAAAATAAAATGCATGGCTGATTTTGGTTGCG
AGATATTTAGTCAAAATTTATGGAACACTAGAGTTAAGTTTTCAGATAACCATTCCTGACCTTT
AGAAAAATAACAAAAAGTAAACATAAAACAATCTAGTATTTTTTTTGTCGAATATAATCTACAA
CAAAAAGGCTTTCCCTTGCTATATATATTTCTTGTAGAAAACCTTAATATGATTAACTTGTTCT
TTTCATTTCTGGAAAATACTACCCATATTACCATCATTGATGTTATCAATAACAGAAAACTATA
CCCAAAAAAATCAAACAGAGTAAACATTTATATTTACAAATTACAAAGAGAACCTGTTCTTCAT
CCACCACTAGGAGACCAAGATTGTTATATGCCATACGTTCTGTAAGAACAGCATGAGTTCCAAC
AATAATATGCAAATCACCATTCCTTATCTTTGTTATTAGCTCATCTTTTTCTTCTTTGGTCTGT
AAAGCAGAAATGTACCCCAAGTCATGCAGAAGATAAGAGACGCAAATTCCATCACTTTAACAGA
CAAAATTTAAAGAAATACTAATGCCTTCCTATCTGAGAACCTACATGCCCACATATGAGCACTA
TCACTACAAAAATTGCTGACCAGTAAGTACAAGAATCCCTTATTGAATGTCAGAAGAAAAGGTT
CGGGAAAGACAAAAGGGACTTCCTTAAAAATATATATTTGAACAGTACTTAATAACATTCAGTG
AAACATCAAAAGGTAGAAAACAGGGTATTATTACCGATTGTTGTACAATCGGTAATATATATAC
CTTTTTTTTCTAACAACAACAAAAGGCACATCAACTTTTTTTCCTAATATGGGATAAGATCATA
AGAGCAGCACACTTTCTAGGGTCAGGACTAATACAGTAATACCTTGTAGTTAAGCAATTAATGA
ATATAAAATGATTTCACAGTAACACAAAAATATTACTACTAACACAATAATGCTTGGTTGTTAA
TCAATTGAGGCATACAAAAAATATTGCTTGGAAATGAAAAACACAATGAATTGCCTGGTGGGGT
AACTTTGAGTTGTGCCATGCTATACCTGAGCACCACTAAACATGGCAACCTTAATATCAGGATA
ATTGGAGAAACGCTCAGACATTACATCATAATGTTGCTTGGCTAGTATTACAGTTGGAGCAAGA
ACCATAGCTTGAAATCCAGCAGATATAACAATGAATATAGCACGCATTGCAACTTCAGTTTTAC
CAAACCCAACATCTCCACAAATCAATCTGTCCATTGGGGTTTCCCTTTCAGTCAGATCTTTGTC
AACATCTATAAAAGCCTGTCATTAACACGAACTGCATTAAATCCATTGATGTTGATTCAATCCT
ATGTATTAGTAAAGTAGTGCATGGATTACTTAATCAACTAGACTCATCAGTTTGCCAATAAGTC
TTGCACAAGGAAAGAATAGCAGCAGCTTCTCTTTCTAAAAAACGACATCAGAATTTCCAGGTGA
ACAAAAGAAAGAACAACAGTATTTGATTAAGAGCCGACCTGGTTTTGGTCTGGAGTGGGCTCAT
AGGGAAATTCAGCAGTAAACTGATCCATTCCCACAGGCTTCGGGTAAGGAGGCCTTTTCTGCCT
CATCCTTTGTAAATACAACTCCATCAAATTGACTACCATTTTCTGAACAGCAAGCTTCCCTTTC
AGTCTTCTCTTCTCCCACGTGGAAGGATCGTTCAGTTTGCTCAAATTCCGTGGTCTCTGCTTCT
CGTGAGGTCTGCAGGAAACATCAAT
						
					

			
		

Sequences
Splice junction sequence	GCTTCCCTTTCAGTCTTCTCTTCTCCCACGTGGAAGGATCGTTCAGTTTGCTCAAATTCCGTGG TCTCTGCTTCTCGTGAGGTCTGCAGGAAACATCAATctggcatcacggaaacctgtcaacgcga gatacaaagtacgtggaatgggtgttgcagacagtgtgagaacatcaatagaagccttgtatga tgcaatct
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 749 Transcript exons: 19426751-19426875,19427252-19427386,19427992-19428237,19 428453-19428695 CTGGCATCACGGAAACCTGTCAACGCGAGATACAAAGTACGTGGAATGGGTGTTGCAGACAGTG TGAGAACATCAATAGAAGCCTTGTATGATGCAATCTTCTCCTTTTGTTGGACACCAAACTTCTG TTCTTCATCCACCACTAGGAGACCAAGATTGTTATATGCCATACGTTCTGTAAGAACAGCATGA GTTCCAACAATAATATGCAAATCACCATTCCTTATCTTTGTTATTAGCTCATCTTTTTCTTCTT TGGTCTGAGCACCACTAAACATGGCAACCTTAATATCAGGATAATTGGAGAAACGCTCAGACAT TACATCATAATGTTGCTTGGCTAGTATTACAGTTGGAGCAAGAACCATAGCTTGAAATCCAGCA GATATAACAATGAATATAGCACGCATTGCAACTTCAGTTTTACCAAACCCAACATCTCCACAAA TCAATCTGTCCATTGGGGTTTCCCTTTCAGTCAGATCTTTGTCAACATCTATAAAAGCCTGGTT TTGGTCTGGAGTGGGCTCATAGGGAAATTCAGCAGTAAACTGATCCATTCCCACAGGCTTCGGG TAAGGAGGCCTTTTCTGCCTCATCCTTTGTAAATACAACTCCATCAAATTGACTACCATTTTCT GAACAGCAAGCTTCCCTTTCAGTCTTCTCTTCTCCCACGTGGAAGGATCGTTCAGTTTGCTCAA ATTCCGTGGTCTCTGCTTCTCGTGAGGTCTGCAGGAAACATCAAT
Genomic sequence	CTGGCATCACGGAAACCTGTCAACGCGAGATACAAAGTACGTGGAATGGGTGTTGCAGACAGTG TGAGAACATCAATAGAAGCCTTGTATGATGCAATCTTCTCCTTTTGTTGGACACCAAACTTCTG TTGAAACATAGAGTTTGTGAATATATATAAAATAAAATAAAATGCATGGCTGATTTTGGTTGCG AGATATTTAGTCAAAATTTATGGAACACTAGAGTTAAGTTTTCAGATAACCATTCCTGACCTTT AGAAAAATAACAAAAAGTAAACATAAAACAATCTAGTATTTTTTTTGTCGAATATAATCTACAA CAAAAAGGCTTTCCCTTGCTATATATATTTCTTGTAGAAAACCTTAATATGATTAACTTGTTCT TTTCATTTCTGGAAAATACTACCCATATTACCATCATTGATGTTATCAATAACAGAAAACTATA CCCAAAAAAATCAAACAGAGTAAACATTTATATTTACAAATTACAAAGAGAACCTGTTCTTCAT CCACCACTAGGAGACCAAGATTGTTATATGCCATACGTTCTGTAAGAACAGCATGAGTTCCAAC AATAATATGCAAATCACCATTCCTTATCTTTGTTATTAGCTCATCTTTTTCTTCTTTGGTCTGT AAAGCAGAAATGTACCCCAAGTCATGCAGAAGATAAGAGACGCAAATTCCATCACTTTAACAGA CAAAATTTAAAGAAATACTAATGCCTTCCTATCTGAGAACCTACATGCCCACATATGAGCACTA TCACTACAAAAATTGCTGACCAGTAAGTACAAGAATCCCTTATTGAATGTCAGAAGAAAAGGTT CGGGAAAGACAAAAGGGACTTCCTTAAAAATATATATTTGAACAGTACTTAATAACATTCAGTG AAACATCAAAAGGTAGAAAACAGGGTATTATTACCGATTGTTGTACAATCGGTAATATATATAC CTTTTTTTTCTAACAACAACAAAAGGCACATCAACTTTTTTTCCTAATATGGGATAAGATCATA AGAGCAGCACACTTTCTAGGGTCAGGACTAATACAGTAATACCTTGTAGTTAAGCAATTAATGA ATATAAAATGATTTCACAGTAACACAAAAATATTACTACTAACACAATAATGCTTGGTTGTTAA TCAATTGAGGCATACAAAAAATATTGCTTGGAAATGAAAAACACAATGAATTGCCTGGTGGGGT AACTTTGAGTTGTGCCATGCTATACCTGAGCACCACTAAACATGGCAACCTTAATATCAGGATA ATTGGAGAAACGCTCAGACATTACATCATAATGTTGCTTGGCTAGTATTACAGTTGGAGCAAGA ACCATAGCTTGAAATCCAGCAGATATAACAATGAATATAGCACGCATTGCAACTTCAGTTTTAC CAAACCCAACATCTCCACAAATCAATCTGTCCATTGGGGTTTCCCTTTCAGTCAGATCTTTGTC AACATCTATAAAAGCCTGTCATTAACACGAACTGCATTAAATCCATTGATGTTGATTCAATCCT ATGTATTAGTAAAGTAGTGCATGGATTACTTAATCAACTAGACTCATCAGTTTGCCAATAAGTC TTGCACAAGGAAAGAATAGCAGCAGCTTCTCTTTCTAAAAAACGACATCAGAATTTCCAGGTGA ACAAAAGAAAGAACAACAGTATTTGATTAAGAGCCGACCTGGTTTTGGTCTGGAGTGGGCTCAT AGGGAAATTCAGCAGTAAACTGATCCATTCCCACAGGCTTCGGGTAAGGAGGCCTTTTCTGCCT CATCCTTTGTAAATACAACTCCATCAAATTGACTACCATTTTCTGAACAGCAAGCTTCCCTTTC AGTCTTCTCTTCTCCCACGTGGAAGGATCGTTCAGTTTGCTCAAATTCCGTGGTCTCTGCTTCT CGTGAGGTCTGCAGGAAACATCAAT

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_003173* 						
					
						PMCS
						0.246866847

Conservation Information
Conserved circRNAs	osi_circ_003173*
PMCS	0.246866847

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							19428583-19428649(-)
						
						Potential amino acid sequence
						
							MVVNLMELYLQRMRQKRPPYPKPVGMDQFTAEFPYEPTPDQNQAFIDVDKDLTERETPMDRLIC
GDVGFGKTEVAMRAIFIVISAGFQAMVLAPTVILAKQHYDVMSERFSNYPDIKVAMFSGAQTKE
EKDELITKIRNGDLHIIVGTHAVLTERMAYNNLGLLVVDEEQKFGVQQKEKIASYKASIDVLTL
SATPIPRTLYLALTGFRDARLMFPADLTRSRDHGI*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	19428583-19428649(-)
Potential amino acid sequence	MVVNLMELYLQRMRQKRPPYPKPVGMDQFTAEFPYEPTPDQNQAFIDVDKDLTERETPMDRLIC GDVGFGKTEVAMRAIFIVISAGFQAMVLAPTVILAKQHYDVMSERFSNYPDIKVAMFSGAQTKE EKDELITKIRNGDLHIIVGTHAVLTERMAYNNLGLLVVDEEQKFGVQQKEKIASYKASIDVLTL SATPIPRTLYLALTGFRDARLMFPADLTRSRDHGI*(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os11g0533100_circ_g.7

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