Detail information of BGIOSGA016140_circ_g.7


General Information
CircRNA Name BGIOSGA016140_circ_g.7
ID in PlantcircBase osi_circ_014242
Alias Chr04:16078422_16080088(ZS97RS2), Chr04:15496787_15498455(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 13168717-13170383  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRCexplorer2, CIRI2, CIRCexplorer2
Parent gene BGIOSGA016140
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA016140_circ_g.1 BGIOSGA016140_circ_g.2 BGIOSGA016140_circ_g.3 BGIOSGA016140_circ_g.4 BGIOSGA016140_circ_g.5 BGIOSGA016140_circ_g.6 BGIOSGA016140_circ_g.8
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered BGIOSGA016140-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGGTCAAGTCGATCATTGGATTGAGCCGTATCTCAGGCTAACAATTGATCGGCTGCGTCGTGCA
GTGAAGCCGTATCTGAAAAGCTTACTTGTACAAGTGgatgtgtatgaagaagttctggagatag
tctcctatatgacattttactcaccaaccatttcactggaaatgtggggcttgtggcctttgat
gatggagg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GATGTGTATGAAGAAGTTCTGGAGATAGTCTCCTATATGACATTTTACTCACCAACCATTTCAC
TGGAAATGTGGGGCTTGTGGCCTTTGATGATGGAGGCCCTTAATGATTGGGCCATTGATTTCTT
TGAGAGTAAGTCTAGTTTTGAATGGCAAGCAATTATGTTTGTTTTAAACTGAGAGTTCTAGATT
AAGCATATTCCTGGGTTTTCTTGCAGTTTTATGTTTGTTATATTTGCTTGTGCTATTTTCCAAT
GACAATCTTGTTTAGTTGTATGAATGCTTGTAATTTGGAAAGTCATGCATGATTTAAAATAATA
TCTGAATCACCTTGTATTAGTTTCCATGTGCTCACTTCACTAGTTTGTTCAGTTTGCATGTCAT
ATTATTTTCTGATTATTTTTTTATTTGGTTCGTGCTCATTTATAAAATTCTTCCAAGTCGCTAA
TAAAAAATGATTAGGTTTCCTAACCTTAACCTGGATTTTAGCAGCTCAAACCTTTTTTTTTGTG
TCCAGCTACTAATCTAGTTAGTCTCAGATTATGTTTGGCTAGATCTGCTTTGTTGTTTTGATTA
TTAGTAAAAGAACAAACTATTATAGTTGAGGTCGGCTTGCTTATTGCTGCACCTATTTTGTGGG
TCAACTTATTCCTCACTTAGAATGGTTCGAAAGGCATTTATTGTGTTAAATTAATGCTTCCTAA
CGTGCATGTGTTTGCAAGATTAGACCTTCAACCAATCTAATACCTTGGACCAAATGCAGCCTTT
GCATTGTCTATTCTTACATTATTCATTCGTTAGGATTATATAAGATGGTTATGCCACTTAGTAA
GGAATTGAATTTATGAAACTAGAACCATCTTGTATTGTTAAGATTCTGTTTAATTGAATTGAAA
TTATGATTTCTGTGTGATAGTTTAGCATGCCGGTATCTGGTATCCATTATGCAAAAGGAAAATT
TTGTATTCACATGTGCATCCAGATTTTAGATAAGAACATCAGGAATAGTTGTGTCATCGTTTGT
TCCTTTGAATTGGAATCCTTGTTTTACATATTTGGTATAGTACTAGAAAGTATTGAAATGCCAA
CTGCTTGGTTGTCTATCCTTCAGAATTTTTTTTAGTCAGCTGCTAAGACTGTTTCTATCTGTAG
AAAATTGCTTGGTTCTACCCTCAGGCCACTAGATGGAACTAATCTCCTACCATCAACTATATTT
TCAGAAGCAATTGTATTATCTTTGACATCCTTTTGCTACATTATTCAATGTTCTTATTGCCCTG
CAGATATTCTGGTACCATTAGACAACTACATTTCCCGTGGCACTGATCAATTTATTGCATGCAA
AGATCCTGATTATCAGCAAAGCCTATGGAGAGCACTGTCATCTGTGAGTGAATTAAATTCATGT
TGCATTAAAATTTGCTCTGAAATATTTTGTAAAGTTCCTAGTTCCTGTAATTTTTACAGTTGAT
TACAAATAATTGTAGATTATGACAGACCAAAACATGGAAGATTCTGACATTATACCTGCTCCCA
AGCTGATTGAAGTCGTTTTTCAAAATTGCAAAGGTCAAGTCGATCATTGGATTGAGCCGTATCT
CAGGCTAACAATTGATCGGCTGCGTCGTGCAGTGAAGCCGTATCTGAAAAGCTTACTTGTACAA
GTG
Conservation Information
Conserved circRNAs osa_circ_023430
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021