Detail information of BGIOSGA016140_circ_g.3


General Information
CircRNA Name BGIOSGA016140_circ_g.3
ID in PlantcircBase osi_circ_005383
Alias 4:13163269|13164832
Organism Oryza sativa ssp. indica
Position chr4: 13163269-13164832  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA016140
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA016140_circ_g.1 BGIOSGA016140_circ_g.2 BGIOSGA016140_circ_g.4 BGIOSGA016140_circ_g.5 BGIOSGA016140_circ_g.6 BGIOSGA016140_circ_g.7 BGIOSGA016140_circ_g.8
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered BGIOSGA016140-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTTGAATATATTAAGAAATCTTGTTCCGATTTCCAACCCTCCAATTGAAGTAGCTGACTTGATC
AAGCTGATATGCAAAATTTTCTGGTCATCCATTTATaagaaaaacatataattccagaaagtga
caagtccatggtccgtgagaatatattgggttttgttactcaattacctccattgctaaggtat
ttctcact
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AAGAAAAACATATAATTCCAGAAAGTGACAAGTCCATGGTCCGTGAGAATATATTGGGTTTTGT
TACTCAATTACCTCCATTGCTAAGGTATTTCTCACTGTCCACCTACCCTTTTCTTAATGAACAA
CATTTTTGTGCCTCTCTCCAAATGCTATAATCGTAGTCCTTATGCTTTTGGTGTACTGTTGTTT
CTGAATTCTAGATAAATTGACTTCTAAGGCATTTTATTTCAATACTGGAGTACTTTTCTTCTTA
CAATTGATGTCAATCTATAAATTCTGGTTGGCCGTCTCACAAAGTCACAATGTTTGCCTACACA
TATTATTGAATGCTGACATTTGTTTAAGTAATTTAGACCCCAGCCAATTGGAGTTAAGATGAGT
CTGAAAATACCATTTTTGACTCATGTTTGTACTTTGGATAGAATATATTTTTGGTCCTTGAATT
CGCAAAGTTCATTTTCACCCTGCCTTTAAAAACAGGTTGTTTACAACCTTCAAAACTGGATAAG
TAACACCTCGATCCCTTTTCCACTGCCATACCAATCAAAACCACTGTGGAATAGGGTTCGGGCC
TTCAAGGTGTTATCTGTTCAGTTTTGTTAGACCTATATGACTGTTTCAGCATTTCTAGATATTG
AATTTAGGTTAGTTTTTCACAGAAGCATCATAAGTTTGAACGGAATGCACTGTCAAGTTCTACA
TTGTAAACAATAACTTGTGGTACTTTTATTTTTGATGAGTATTTCAGTGAAATTTGTAGTGGAT
GTGTTTTTCCTGATGACGAAGCACAATATTCTTCAGTACTGATGGTTATGAAATGTGCATACAA
GTAATTGACACATATTTCATGGTCTGTAGAGCCCAGCTTGGAGAAAGTATCAAGACCTTGATCC
TTGCAGATTATCCTGAGCAGTGGCCTAGTCTTCTTCCTTGGGTAACACATAATCTAGAATCACA
GGATCAAATATTTGGAGCACTATATGTGCTAAGGATTCTTGCCCGGAAATATGAGTGAGTCTAA
ATGCCAGAATTCTACCTTCTTTTTTATTTGTTTGTATTCACTCTATCCGTCTTCCTATTTTGAA
TTATTTTTCTGTAACTCCAAAAAACTTAGGATTTACGTGTTTCTGTTACTCTGCTGTGAAATAT
CTCTACACATCATGTTATTCACTCTATTTGTTTTATTTGCTGACTTTGTGATCTTTATTGTAAT
TTAGAGATTACCCAAAGAAATAGTGTAAAGATAACATTGTTGTTATAGTTTTCTTAAAATGATG
GGTGCACAACATAATTCTTTGCTCTATGAACATTTTTCTGGACAACATCATACAGTGCTTACCT
TTTTGTCTTTTGTTTATGTGAGCTGCCACACTATCTCATTACTTTCTTCATGATTAGGTTCAAG
TCAGAGGACGAGAGGATACCTTTGTATCAAATTGTTGAGGAATGCTTTCCTCGTTTGTTGAATA
TATTAAGAAATCTTGTTCCGATTTCCAACCCTCCAATTGAAGTAGCTGACTTGATCAAGCTGAT
ATGCAAAATTTTCTGGTCATCCATTTAT
Conservation Information
Conserved circRNAs osa_circ_023425*
PMCS
Functional Information
Coding potential Y
Potential coding position 13163307-13164797(-)
13163305-13163280(+)
Potential amino acid sequence MDLSLSGIICFSYKWMTRKFCISA*(-)
MVRENILGFVTQLPPLLRAQLGESIKTLILADYPEQWPSLLPWVTHNLESQDQIFGALYVLRIL
ARKYEFKSEDERIPLYQIVEECFPRLLNILRNLVPISNPPIEVADLIKLICKIFWSSIYKKNI*
(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021