Detailed infomation of each circRNA
General Information | |
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CircRNA Name | BGIOSGA016140_circ_g.3 |
ID in PlantcircBase | osi_circ_005383 |
Alias | 4:13163269|13164832 |
Organism | Oryza sativa ssp. indica |
Position | chr4: 13163269-13164832 JBrowse» |
Reference genome | Oryza_indica.ASM465v1.42 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | BGIOSGA016140 |
Parent gene annotation | NA |
Parent gene strand | + |
Alternative splicing | BGIOSGA016140_circ_g.1 BGIOSGA016140_circ_g.2 BGIOSGA016140_circ_g.4 BGIOSGA016140_circ_g.5 BGIOSGA016140_circ_g.6 BGIOSGA016140_circ_g.7 BGIOSGA016140_circ_g.8 |
Support reads | NA |
Tissues | leaf |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | BGIOSGA016140-TA:3 |
Conservation Information | |
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Conserved circRNAs | osa_circ_023425* |
PMCS |
Functional Information | |
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Coding potential | Y |
Potential coding position |
13163307-13164797(-) 13163305-13163280(+) |
Potential amino acid sequence |
MDLSLSGIICFSYKWMTRKFCISA*(-) MVRENILGFVTQLPPLLRAQLGESIKTLILADYPEQWPSLLPWVTHNLESQDQIFGALYVLRIL ARKYEFKSEDERIPLYQIVEECFPRLLNILRNLVPISNPPIEVADLIKLICKIFWSSIYKKNI* (+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Huang et al., 2021 |