Detail information of Os04g0337201_circ_g.7


General Information
CircRNA Name Os04g0337201_circ_g.7
ID in PlantcircBase osa_circ_023430
Alias Os_ciR4790
Organism Oryza sativa
Position chr4: 15872776-15874442  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method find_circ
Parent gene Os04g0337201
Parent gene annotation Similar to OSIGBa0137O04.8 protein. (Os04t0337201-00)
Parent gene strand +
Alternative splicing NA
Support reads 4
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os04t0337201-00:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGGTCAAGTCGATCATTGGATTGAGCCGTATCTCAGGCTAACAATTGATTGGCTGCGTCGTGCA
GTGAAGCCGTATCTGAAAAGCTTACTTGTACAAGTGatgtgtatgaagaagttctggagatagt
ctcctatatgacattttactcaccaaccatttcactggaaatgtggggcttgtggcctttgatg
atggaggc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 416
Transcript exons: 15872776-15872907,15874059-15874162,15874263-15874442
ATGTGTATGAAGAAGTTCTGGAGATAGTCTCCTATATGACATTTTACTCACCAACCATTTCACT
GGAAATGTGGGGCTTGTGGCCTTTGATGATGGAGGCCCTTAATGATTGGGCCATTGATTTCTTT
GAGAATATTCTGGTACCATTAGACAACTACATTTCCCGTGGCACTGATCAATTTATTGCATGCA
AAGATCCTGATTATCAGCAAAGCCTATGGAGAGCACTGTCATCTATTATGACAGACCAAAACAT
GGAAGATTCTGACATTATACCTGCTCCCAAGCTGATTGAAGTCGTTTTTCAAAATTGCAAAGGT
CAAGTCGATCATTGGATTGAGCCGTATCTCAGGCTAACAATTGATTGGCTGCGTCGTGCAGTGA
AGCCGTATCTGAAAAGCTTACTTGTACAAGTG

Genomic sequence ATGTGTATGAAGAAGTTCTGGAGATAGTCTCCTATATGACATTTTACTCACCAACCATTTCACT
GGAAATGTGGGGCTTGTGGCCTTTGATGATGGAGGCCCTTAATGATTGGGCCATTGATTTCTTT
GAGAGTAAGTCTAGTTTTGAATGGCAAGCAATTATGTTTGTTTTAAACTGAGAGTTCTAGATTA
AGCATATTCCTGGGTTTTCTTGCAGTTTTATGTTTGTTATATTTGCTTGTGCTATTTTCCAATG
ACAATCTTGTTTAGTTGTATGAATGCTTGTAATTTGGAAAGTCATGCATGATTTAAAATAATAT
CTGAATCACCTTGTATTAGTTTCCATGTGCCCACTTCACTAGTTTGTTCAGTTTGCATGTCATA
TTATTTTCTGATTATTTTTTTTATTTGGTTCGTGCTCATTTATAAAATTCTTCCAAGTCGCTAA
TAAAAAATGATTAGGTTTCCTAACCTTAACCTGGATTTTAGCAGCTCAAACCTTTTTTTTTGTG
TCCAGCGACTAATCTAGTTAGTCTCAGATTATGTTTGGCTAGATCTGCTTTGTTGTTTTGATTA
TTAGTAAAAGAACAAACTATTATAGTTGAGGTCGGCTTGCTTATTGCTGCACCTATTTTGTGGG
TCAACTTATTCCTCACTTAGAATGGTTCGAAAGGCATTTATTGTGTTAAATTAATGCTTCCTAA
CGTGCATGTGTTTGCAAGATTAGACCTTCAACCAATCTAATACCTTGGACCAAATGCAGCCTTT
GCATTGTCTATTCTTACATTATTCATTCGTCAGGATTATATAAGATGGTTATGCCACTTAGTAA
GGAATTGAATTTATGAAACTAGAACCATCTTGTATTGTTAAGATTCTGTTTAATTGAATTGAAA
TTATGATTTCTGTGTGATAGTTTAGCATGCCGGTATCTGGTATCCATTATGCAAAAGGAAAATT
TTGTATTCACATGTGCATCCAGATTTTAGATAAGAACATCAGGAATAGTTGTGTCATCGTTTGT
TCCTTTGAATTGGAATCCTTGTTTTACATATTTGGTATAGTACTAGAAAGTATTGAAATGCCAA
CTGCTTGGTTGTCTATCCTTCAGAATTTTTTTTAGTCAGCTGCTAAGACTGTTTCTATCTGTAG
AAAATTGCTTGGTTCTACCCTCAGGCCACTAGATGGAACTAATCTCCTACCATCAACTATATTT
TCAGAAGCAATTGTATTATCTTTGACATCCTTTTGCTACATTATTCAATGTTCTTATTGCCCTG
CAGATATTCTGGTACCATTAGACAACTACATTTCCCGTGGCACTGATCAATTTATTGCATGCAA
AGATCCTGATTATCAGCAAAGCCTATGGAGAGCACTGTCATCTGTGAGTGAATTAAATTCATGT
TGCATTAAAATTTGCTCTGAAATATTTTGTAAAGTTCCTAGTTCCTGTAATTTTTACAGTTGAT
TACAAATAATTGTAGATTATGACAGACCAAAACATGGAAGATTCTGACATTATACCTGCTCCCA
AGCTGATTGAAGTCGTTTTTCAAAATTGCAAAGGTCAAGTCGATCATTGGATTGAGCCGTATCT
CAGGCTAACAATTGATTGGCTGCGTCGTGCAGTGAAGCCGTATCTGAAAAGCTTACTTGTACAA
GTG
Conservation Information
Conserved circRNAs osi_circ_014242
PMCS 0.216236998
Functional Information
Coding potential Y
Potential coding position 15872812-15872799(+)
Potential amino acid sequence MTFYSPTISLEMWGLWPLMMEALNDWAIDFFENILVPLDNYISRGTDQFIACKDPDYQQSLWRA
LSSIMTDQNMEDSDIIPAPKLIEVVFQNCKGQVDHWIEPYLRLTIDWLRRAVKPYLKSLLVQVM
CMKKFWR*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015