Detail information of BGIOSGA016140_circ_g.8


General Information
CircRNA Name BGIOSGA016140_circ_g.8
ID in PlantcircBase osi_circ_005384
Alias 4:13168718|13174362
Organism Oryza sativa ssp. indica
Position chr4: 13168718-13174362  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA016140
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA016140_circ_g.1 BGIOSGA016140_circ_g.2 BGIOSGA016140_circ_g.3 BGIOSGA016140_circ_g.4 BGIOSGA016140_circ_g.5 BGIOSGA016140_circ_g.6 BGIOSGA016140_circ_g.7
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered BGIOSGA016140-TA:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGATGAAGAAGATGAGGATATTGAGTCTGATAAGGAGATGGGATATGATGATGAGGATGGGGAT
GAAGTATCTAGTGTCAATCTTCAGAAACTAAGAGAGatgtgtatgaagaagttctggagatagt
ctcctatatgacattttactcaccaaccatttcactggaaatgtggggcttgtggcctttgatg
atggaggc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential Y
Potential coding position 13168754-13168741(+)
Potential amino acid sequence MTFYSPTISLEMWGLWPLMMEALNDWAIDFFENILVPLDNYISRGTDQFIACKDPDYQQSLWRA
LSSIMTDQNMEDSDIIPAPKLIEVVFQNCKGQVDHWIEPYLRLTIDRLRRAVKPYLKSLLVQVI
ANTLYYNPSLTLGTLHKLGVATEIFNLWFGMLQQVKKSGIRANFKREHDKKVCCLGLTSLISLP
ANHIPPEALERIFKATLELLVSYKDQVAESKRENEAAAEDLDGFDGDEEDEDIESDKEMGYDDE
DGDEVSSVNLQKLREMCMKKFWR*(+)
Sponge-miRNAs osa-miR2919
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021