Detail information of BGIOSGA032684_circ_g.2


General Information
CircRNA Name BGIOSGA032684_circ_g.2
ID in PlantcircBase osi_circ_002772
Alias 10:7063612|7063932
Organism Oryza sativa ssp. indica
Position chr10: 7063612-7063932  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA032684
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA032684_circ_g.1 BGIOSGA032684_circ_g.2 BGIOSGA032684_circ_g.3 BGIOSGA032684_circ_igg.1 BGIOSGA032684_circ_g.3 BGIOSGA032684_circ_g.4 BGIOSGA032684_circ_igg.5 BGIOSGA032684_circ_g.6 BGIOSGA032684_circ_g.7 BGIOSGA032684_circ_g.8
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered BGIOSGA032684-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATTAGGAGAAAAGGGTAAAGTTCAACTCATTCGTGACTCCAAGGATAACATCGAGATGACAGTA
TCTGAGTTGCAGAAGAACCCTATCAACTACACACAGgtgtcgatgtcaagaagaatgttattgt
agccattacctctgacaagggtctttgtggtggtatcaactcaacgtcagttaaagtcagcaaa
gcactcca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTGTCGATGTCAAGAAGAATGTTATTGTAGCCATTACCTCTGACAAGGGTCTTTGTGGTGGTAT
CAACTCAACGTCAGTTAAAGTCAGCAAAGCACTCCACAAGTTGACTTCTGGTAATACTTTGCAT
GGTTATTTTTGTTATCATTTAAACATTAGAAGATACTAAAACAAAGTTTTTGCACCTCAAATCA
GGACCAGAGAAAGAAAGCAAGTATGTCATATTAGGAGAAAAGGGTAAAGTTCAACTCATTCGTG
ACTCCAAGGATAACATCGAGATGACAGTATCTGAGTTGCAGAAGAACCCTATCAACTACACACA
G
Conservation Information
Conserved circRNAs osa_circ_006455*
PMCS
Functional Information
Coding potential Y
Potential coding position 7063834-7063921(-)
7063889-7063638(+)
Potential amino acid sequence MTYLLSFSGPEVNLWSALLTLTDVELIPPQRPLSEVMATITFFLTSTPVCS*(-)
MTVSELQKNPINYTQVSMSRRMLL*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021