Detail information of BGIOSGA032684_circ_g.3


General Information
CircRNA Name BGIOSGA032684_circ_g.3
ID in PlantcircBase osi_circ_002773
Alias 10:7063612|7065966
Organism Oryza sativa ssp. indica
Position chr10: 7063612-7065966  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA032684
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA032684_circ_g.1 BGIOSGA032684_circ_g.2 BGIOSGA032684_circ_g.3 BGIOSGA032684_circ_igg.1 BGIOSGA032684_circ_g.2 BGIOSGA032684_circ_g.4 BGIOSGA032684_circ_igg.5 BGIOSGA032684_circ_g.6 BGIOSGA032684_circ_g.7 BGIOSGA032684_circ_g.8
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered BGIOSGA032684-TA:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGAATCTGGTAAGGTTGGTGACCTGGATTCATATGAAATTGAAGGAGGTGAAACTAAATCAGAA
ATTCTTCAGAATCTTACCGAGTTCCAGTTTTCTTGTgtgtcgatgtcaagaagaatgttattgt
agccattacctctgacaagggtctttgtggtggtatcaactcaacgtcagttaaagtcagcaaa
gcactcca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTGTCGATGTCAAGAAGAATGTTATTGTAGCCATTACCTCTGACAAGGGTCTTTGTGGTGGTAT
CAACTCAACGTCAGTTAAAGTCAGCAAAGCACTCCACAAGTTGACTTCTGGTAATACTTTGCAT
GGTTATTTTTGTTATCATTTAAACATTAGAAGATACTAAAACAAAGTTTTTGCACCTCAAATCA
GGACCAGAGAAAGAAAGCAAGTATGTCATATTAGGAGAAAAGGGTAAAGTTCAACTCATTCGTG
ACTCCAAGGATAACATCGAGATGACAGTATCTGAGTTGCAGAAGAACCCTATCAACTACACACA
GGTATGTTGTTTTCCTGAGCTTTTACTATGCTATGGGTGCACCTTTTATTATGAAATGCTATTC
ATTATTTGTGAATTTGTTTCTGAATTAAGTCTAAAGTTTGGCAATTGAAAACTGTTTTGTAGTT
TCTTATATTGTCAGTGAATTTTGCTCTCGAATTTTGAATTTTGCAAGAGAAGCATTCCTAATGT
AAAAGGAATTCTGTCATGTCACATTGGACTTCTGATTTGGAACACATTTCAATTTGTCAATGAC
TAATCTCTGTTATTATAGCCAAAATATATATACTGATTTATCAATCTAAAATTTTACCAAATCA
GACTCACTTCAGCCCACTCCGACTGTACCTTCCATTCCTTTTTCTCCATACTTTCTCCTGTTGC
TGGCAAGCTGGGGCTAAGACTTGTTACAGAAAATCACTCTTTGAGATACTCGAATGAGACATAG
ACATGATTGATCATCAAATGATGTGTTCCTCTTGTGTTTTAATAGTAACACTAGTTAGGGACTA
GGAATAAGGCAATGATGTTGGAGCTATTGCAAGCAATGAGGCAGGGGAAGGGAGCCTGGTGCCA
TCTTGGGAGGCTCCCTGTTTCAATATTTCCTTAAGCCAGCCACCACTACCTGGGTTCTCTAAGG
CTGTCACCTGTCCTGTCCTGCTGATGTGTCCACCTGTGCCACTGAATCACAGCTGCTATGTTGG
GGGCTGACACAGCTGCCATATTGGATCTGACTTGGTTTTGCTGGCCCTAGTTGGTGGGGAAAAA
GGTCTGATAAGGGGATGGAGCATCAACCTGTGCTGAAAAAGTGGGAGGAGGGTACGGTAGTCAA
GTTGCATGGCTAGTCATGGACCAATTGACAAGTCAGCCACAGAGCACGACTTGAGGGCTACAAT
TTGATTTGGGAAACTTGGAATACGAGATAAGAGGAGAGCTGTTCAGTTTTCTCCTCCATATATG
ATTAGAGGTAGCCACCGGAGTCTGAGTAAGATTAGAGGGAGCACCAATAGTTGCACACCTGCTT
TCCTCATCTGTTCCCTGTTTTTTCTGACCTCACTTCTAATGTACCAACTCAAAGGCTTGTCTTT
GACTAAGTCATGATTAGTCCTCAAGTTGGTTTAGGTCTTGAGGGATGACTAGACTGACTGTGCG
ACTAACAACCATGGCTGAAGAATAGCACATCGGCATGGAGAAATGTGAAATATAGTGATGGATC
TCATTGCTGTAGGATAAGGAATGGCACTGGTGGTGGCGCAAAGTTGTGCAGTTAGCACAATTAG
TTTCAGCTGTGTTAATTACGTTGCAGCAGAAGTTCATGGATGTGGTATATTTCAATGAAACAAG
AGAGGATTATGGTACTAGATGATGTGTGAGAAGAAAGTGTTTTTTAGATTTAAGCTTCTAGTTA
TGCTGTAGGTTGAAATATCTCATTTTCCTTTGCAAAGAAAGAGGATCTGGATCATATTCATCTT
TTGTTATGTGTGCACGCATTGCAATATATCATAGCAGCTGGTATGATTTGAACAAAATTTGCTA
ACAAACCCTGAACTGTAAAAAGTCTTATGTTGTCTGACTTCCTTGAAATGTCTTCAGGGAAGTT
TTTGTTCAGTCGATTATTATTTGGTGGCTAAAGCAGATTTCAAAAACCTAATGTGCCTATTGGA
TTGAATAGATCTCCACTGTTTTCTTTGATGATGTTTCAGATTGCTGTGCTGGCAGATGATATCT
TGAAAAATGTTGAGTATGATGCTCTAAGGGTTGTTTTTAACAAGTTCCACTCGGTCATATCATT
CAAGCCCACAATGACAACCATACTTTCCCCAGAGGTAAATATCGGTGCTGAGGACATGAATTTG
TGCTCCTATAAAGTAATATGAATGATGTGACGTTAATACTAGTGGTTTGAATTGTTTTATAGGT
TATGGAGAAAGAATCGGAATCTGGTAAGGTTGGTGACCTGGATTCATATGAAATTGAAGGAGGT
GAAACTAAATCAGAAATTCTTCAGAATCTTACCGAGTTCCAGTTTTCTTGT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential Y
Potential coding position 7063834-7065946(-)
7065900-7063651(+)
7063889-7063638(+)
Potential amino acid sequence MTYLLSFSGPEVNLWSALLTLTDVELIPPQRPLSEVMATITFFLTSTHKKTGTR*(-)
MKLKEVKLNQKFFRILPSSSFLVCRCQEECYCSHYL*(+)
MTVSELQKNPINYTQIAVLADDILKNVEYDALRVVFNKFHSVISFKPTMTTILSPEVMEKESES
GKVGDLDSYEIEGGETKSEILQNLTEFQFSCVSMSRRMLL*(+)
Sponge-miRNAs osa-miR529a
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021