Detail information of Zm00001d018859_circ_g.2


General Information
CircRNA Name Zm00001d018859_circ_g.2
ID in PlantcircBase zma_circ_009213
Alias Zm07circ00006, GRMZM2G018508_C1
Organism Zea mays
Position chr7: 7539740-7542379  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method CIRI2
Parent gene Zm00001d018859
Parent gene annotation Ubiquitin carboxyl-terminal hydrolase 13
Parent gene strand -
Alternative splicing Zm00001d018859_circ_g.1 Zm00001d018859_circ_g.3 Zm00001d018859_circ_g.4 Zm00001d018859_circ_g.5 Zm00001d018859_circ_g.6 Zm00001d018859_circ_g.7
Support reads NA
Tissues leaf, endosperm
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Zm00001d018859_T028:8
Zm00001d018859_T011:8
Zm00001d018859_T001:8
Zm00001d018859_T022:8
Zm00001d018859_T013:8
Zm00001d018859_T031:8
Zm00001d018859_T026:8
Zm00001d018859_T010:8
Zm00001d018859_T015:8
Zm00001d018859_T033:8
Zm00001d018859_T023:7
Zm00001d018859_T032:8
Zm00001d018859_T020:8
Zm00001d018859_T008:8
Zm00001d018859_T003:8
Zm00001d018859_T017:8
Zm00001d018859_T004:8
Zm00001d018859_T018:8
Zm00001d018859_T038:8
Zm00001d018859_T030:8
Zm00001d018859_T005:8
Zm00001d018859_T027:8
Zm00001d018859_T002:8
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCAGTACAGAATATCAGTCTGCTACAGCATGTCCAAATTCTTACATCTCGAGGAAAAAATCGTC
CTCCTTGGGCTTCTCCAGTGAACGAAAGTGGACCACctttgagaaatcctcatctggaacctta
agctttctctgtatacgctctttgatagaagatagggtctcatcctcacgaataaccataaaaa
aaggttct
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 741
Transcript exons: 7539740-7539856,7540969-7541052,7541146-7541211,7541583-
7541648,7541731-7541802,7541881-7541982,7542067-7542244,
7542324-7542379
CTTTGAGAAATCCTCATCTGGAACCTTAAGCTTTCTCTGTATACGCTCTTTGATAGAAGATAGG
GTCTCATCCTCACGAATAACCATAAAAAAAGGTTCTCCAAAGTTCTGAACTTGCGTTTGGTTTT
GAGTATCTTTTGTAAAATGATATACATGAATCAATCGATCAAAGGGACCAAGGTTTTTTTCCTC
ATCTGGAACCTCCTCCGCACGCAGTGTCCAGTACTGATCATTAATGTTTTCAATCTTTTCATTT
GGTGCAAACACCTTGTATATCTTGTGATAAAAGACCTCAAGTAATCTCAGTTCAGCATTGGGAT
GAGATAACTCAACCTTTGTTTTGATATCGTTTAGCACATCGCCAACAGTGCTGTTTTTTGGCAA
TCTTATACTGTGAACTGACACCTCATCTTTTGTGGCATGATGGTATGTAACTTTTAATGTCTTC
AGCGCTTGTAATTCTGGAAGTGGTATGTCCAATACTTCATAGTACAGAATATCAGAAGTCTGGT
TATAATGAATCAGCATGTCCAGTAGACGTTCAACGCCTCTGTACTTTATTGGCTGAGGCTTAGG
CTGCTGCGAATAACAATTATGTGATGTAAGCCGAATTTTCGATGGGTCATCCACGCCAAGTTTT
TCAGCTACTTTTTCCACGACTTGATCATATGTGAAAATCTTTGACATCTCGAGGAAAAAATCGT
CCTCCTTGGGCTTCTCCAGTGAACGAAAGTGGACCAC

Genomic sequence CTTTGAGAAATCCTCATCTGGAACCTTAAGCTTTCTCTGTATACGCTCTTTGATAGAAGATAGG
GTCTCATCCTCACGAATAACCATAAAAAAAGGTTCTCCAAAGTTCTGAACTTGCTGTTGACAAC
AACACAAATATTCGGTATAGTTTTAGCTATATAAAAGAATACGCTATTAATATCAGAATGATTG
AACGTTAACAGTTACTGAATAGCAGTATTGTACTATTGTTCTTCCATCCATGTTATATACTTCA
TCCCAAATTATAAGACGTTTTGGCCTTTCTAGTTTCATAACTTTTTACTATGTAGTGCATAGCA
AAAGCTGTGAATTTAGAGAAGTCAAAATATCTTATAAATGTGTGTCATTTTAGAGAAGTCAAAG
TATCATTTTTTTCTTGAACAAGGAGAAATGTGTGTCATTTTATTAATAAGAAAATAATACATAT
GAGGGTCAACCGGTCAAGAGTCCACTTCTAGTACAGGGGAGACAGAGGCTCCCGGACACAACAC
ACTCACAGTACAAGAATTACCACGAACAAGGACTACTAGACCAGGGCCAAGGAAAGTATTTTTA
AGATATTTGAGCAAGAATGAGCATTATAATGTCAAACATATATCATAAGAAGGATACAGAATAG
TAACTAGTATATGTCCAAAAGGAGTACTTAGGCAAATTTATCCTACTGTTACAGTATAGTAGTT
ATTAAAGACCCATGTATTCAAGATGACATATACATACCTAAGGAAAATTACTAGAAATATGTGA
ACAAGATGAGGAAGATACTGTTAGATAGCACTTATTTTCAATAGATATCCAATAGATAATACTC
AGATGAAAAAGAAAAAAAAACTCAAGCAACTATGAATGGTCGTGGGGATGTACAGTAACACCTC
CCATGGTCCCACAAATGTAGGATTGGTTCCTAGCACAAGTACAACCTGCTTAACTCAGTGAACA
TGTATAAGGCGCACACCCTGACAGAGCGCAATGTACAGGTTTATCTAAAAGGATATTTTAAGAC
ACACCACTGAGGCAACAGATTTAGAAAAAAAATGAAACCGAAGCCATCCGACACTACATTGAGA
CTAAGGGTGTTATAATGAATTAATAATCAAAAGAATTGTGTCATTATATTCTAGAACTTCAGCT
GTTTTTTTATATACACGTTAAAAATAATGACAAGACTGCGACATTCAGATGAACATTAGCCAAG
TTTCCATCATTACCGTTTGGTTTTGAGTATCTTTTGTAAAATGATATACATGAATCAATCGATC
AAAGGGACCAAGGTTTTTTTCCTCATCTGGAACCTAGAAAGAGAAGGTAAAAGTAGCCATTAGT
AAGTAAGAGACAAATGAGAACCTTAAAAAACCAATCTAATTGTGAAGCATGAAATAACATACCT
CCTCCGCACGCAGTGTCCAGTACTGATCATTAATGTTTTCAATCTTTTCATTTGGTGCAAACAC
CTGCAGGAATTATTACACGTTAAATAACAATAGCCCATGGAATTTGTTAGTATGAGATGCACAC
ATACTTAGCAAAATGCATATATTCCTTTTGCCTACATGCCACTAACGAAGTACATACATTGATA
CATAAAGAATACTACAACATAACTAAATGCAATTTAGCACCTTGTATATCTTATTATAAAATAT
CTCAAGTAATCTTAGCTAAGCATTGGGGTGAGACAACTCGATAGCCCATGGAATTTGTTAGTAT
GTGATGCATGTGTACTTAGCAAAATGCATATATTCTATTTGCCTACATGCCCCTAACTAAGTGC
ATGGATTGATACATAAAGCATACTGCAGCAGAATTAAATGCAACTTAGCACCTTGTATATCTTG
TGATAAAAGACCTCAAGTAATCTCAGTTCAGCATTGGGATGAGATAACTCAACCTGATATGATT
CAAGACATTAGTTAACTTCACAATGCAAAGGGTCCCATAATTAAAGTATGTCAAAAAAAAACAT
GGGATACCTTTGTTTTGATATCGTTTAGCACATCGCCAACAGTGCTGTTTTTTGGCAATCTTAT
ACTGTGAACTGACACCTGATGATTGATAAAACATATTCTAGGACAGACATACAAAGGTCAACAA
CAGCTATTGAGAAAGTCCAGGAAAATAACCTCATCTTTTGTGGCATGATGGTATGTAACTTTTA
ATGTCTTCAGCGCTTGTAATTCTGGAAGTGGTATGTCCAATACTTCATAGTACAGAATATCAGA
AGTCTGATAGATGAAAAAAATATGTTATCTTGTACTTTACTTGCATGGAGACCAACTGAAACAT
AGATCAAAACTCAGTGTAGCGACCTGGTTATAATGAATCAGCATGTCCAGTAGACGTTCAACGC
CTCTGTACTTTATTGGCTGAGGCTTAGGCTGCTGCGAATAACAATTATGTGATGTAAGCCGAAT
TTTCGATGGGTCATCCACGCCAAGTTTTTCAGCTACTTTTTCCACGACTTGATCATATGTGAAA
ATCTTTGACCTATATAAAAACAAAAAAAAGAAAAGGTTTCATTAGCAGTACAGAATATCAGTCT
GCTACAGCATGTCCAAATTCTTACATCTCGAGGAAAAAATCGTCCTCCTTGGGCTTCTCCAGTG
AACGAAAGTGGACCAC
Conservation Information
Conserved circRNAs NA
PMCS 0.132377478
Functional Information
Coding potential Y
Potential coding position 7542327-7539742(-)
7541008-7542206(-)
Potential amino acid sequence MSKIFTYDQVVEKVAEKLGVDDPSKIRLTSHNCYSQQPKPQPIKYRGVERLLDMLIHYNQTSDI
LYYEVLDIPLPELQALKTLKVTYHHATKDEVSVHSIRLPKNSTVGDVLNDIKTKVELSHPNAEL
RLLEVFYHKIYKVFAPNEKIENINDQYWTLRAEEVPDEEKNLGPFDRLIHVYHFTKDTQNQTQV
QNFGEPFFMVIREDETLSSIKERIQRKLKVPDEDFSKVVHFRSLEKPKEDDFFLEMSKIFTYDQ
VVEKVAEKLGVDDPSKIRLTSHNCYSQQPKPQPIKYRGVERLLDMLIHYNQTSDILYYEVLDIP
LPELQALKTLKVTYHHATKDEVSVHSIRLPKNSTVGDVLNDIKTKVELSHPNAELRLLEVFYHK
IYKVFAPNEKIENINDQYWTLRAEEVPDEEKNLGPFDRLIHVYHFTKDTQNQTQVQNFGEPFFM
VIREDETLSSIKERIQRKLKVPDEDFSKVVHFRSLEKPKEDDFFLEMSKIFTYDQVVEKVAEKL
GVDDPSKIRLTSHNCYSQQPKPQPIKYRGVERLLDMLIHYNQTSDILYYEVLDIPLPELQALKT
LKVTYHHATKDEVSVHSIRLPKNSTVGDVLNDIKTKVELSHPNAELRLLEVFYHKIYKVFAPNE
KIENINDQYWTLRAEEVPDEEKNLGPFDRLIHVYHFTKDTQNQTQVQNFGEPFFMVIREDETLS
SIKERIQRKLKVPDEDFSKVVHFRSLEKPKEDDFFLEMSKIFTYDQVVEKVAEKLGVDDPSKIR
LTSHNCYSQQPKPQPIKYRGVERLLDMLIHYNQTSDILYYEVLDIPLPELQALKTLKVTYHHAT
KDEVSVHSIRLPKNSTVGDVLNDIKTKVELSHPNAELRLLEVFYHKIYKVFAPNEKIENINDQY
WTLRAEEVPDEEKNLGPFDRLIHVYHFTKDTQNQTQVQNFGEPFFMVIREDETLSSIKERIQRK
LKVPDEDFSK(-)
MYIILQKILKTKRKFRTLENLFLWLFVRMRPYLLSKSVYRESLRFQMRISQRWSTFVHWRSPRR
TIFSSRCQRFSHMIKSWKK*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Han et al., 2020;Zhang et al., 2019