Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | Zm00001d018859_circ_g.2 |
| ID in PlantcircBase | zma_circ_009213 |
| Alias | Zm07circ00006, GRMZM2G018508_C1 |
| Organism | Zea mays |
| Position | chr7: 7539740-7542379 JBrowse» |
| Reference genome | AGPv4.38 |
| Type | u-circRNA |
| Identification method | CIRI2 |
| Parent gene | Zm00001d018859 |
| Parent gene annotation |
Ubiquitin carboxyl-terminal hydrolase 13 |
| Parent gene strand | - |
| Alternative splicing | Zm00001d018859_circ_g.1 Zm00001d018859_circ_g.3 Zm00001d018859_circ_g.4 Zm00001d018859_circ_g.5 Zm00001d018859_circ_g.6 Zm00001d018859_circ_g.7 |
| Support reads | NA |
| Tissues | leaf, endosperm |
| Exon boundary | Yes-Yes |
| Splicing signals | CT-AC |
| Number of exons covered | Zm00001d018859_T028:8 Zm00001d018859_T011:8 Zm00001d018859_T001:8 Zm00001d018859_T022:8 Zm00001d018859_T013:8 Zm00001d018859_T031:8 Zm00001d018859_T026:8 Zm00001d018859_T010:8 Zm00001d018859_T015:8 Zm00001d018859_T033:8 Zm00001d018859_T023:7 Zm00001d018859_T032:8 Zm00001d018859_T020:8 Zm00001d018859_T008:8 Zm00001d018859_T003:8 Zm00001d018859_T017:8 Zm00001d018859_T004:8 Zm00001d018859_T018:8 Zm00001d018859_T038:8 Zm00001d018859_T030:8 Zm00001d018859_T005:8 Zm00001d018859_T027:8 Zm00001d018859_T002:8 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.132377478 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
7542327-7539742(-) 7541008-7542206(-) |
| Potential amino acid sequence |
MSKIFTYDQVVEKVAEKLGVDDPSKIRLTSHNCYSQQPKPQPIKYRGVERLLDMLIHYNQTSDI LYYEVLDIPLPELQALKTLKVTYHHATKDEVSVHSIRLPKNSTVGDVLNDIKTKVELSHPNAEL RLLEVFYHKIYKVFAPNEKIENINDQYWTLRAEEVPDEEKNLGPFDRLIHVYHFTKDTQNQTQV QNFGEPFFMVIREDETLSSIKERIQRKLKVPDEDFSKVVHFRSLEKPKEDDFFLEMSKIFTYDQ VVEKVAEKLGVDDPSKIRLTSHNCYSQQPKPQPIKYRGVERLLDMLIHYNQTSDILYYEVLDIP LPELQALKTLKVTYHHATKDEVSVHSIRLPKNSTVGDVLNDIKTKVELSHPNAELRLLEVFYHK IYKVFAPNEKIENINDQYWTLRAEEVPDEEKNLGPFDRLIHVYHFTKDTQNQTQVQNFGEPFFM VIREDETLSSIKERIQRKLKVPDEDFSKVVHFRSLEKPKEDDFFLEMSKIFTYDQVVEKVAEKL GVDDPSKIRLTSHNCYSQQPKPQPIKYRGVERLLDMLIHYNQTSDILYYEVLDIPLPELQALKT LKVTYHHATKDEVSVHSIRLPKNSTVGDVLNDIKTKVELSHPNAELRLLEVFYHKIYKVFAPNE KIENINDQYWTLRAEEVPDEEKNLGPFDRLIHVYHFTKDTQNQTQVQNFGEPFFMVIREDETLS SIKERIQRKLKVPDEDFSKVVHFRSLEKPKEDDFFLEMSKIFTYDQVVEKVAEKLGVDDPSKIR LTSHNCYSQQPKPQPIKYRGVERLLDMLIHYNQTSDILYYEVLDIPLPELQALKTLKVTYHHAT KDEVSVHSIRLPKNSTVGDVLNDIKTKVELSHPNAELRLLEVFYHKIYKVFAPNEKIENINDQY WTLRAEEVPDEEKNLGPFDRLIHVYHFTKDTQNQTQVQNFGEPFFMVIREDETLSSIKERIQRK LKVPDEDFSK(-) MYIILQKILKTKRKFRTLENLFLWLFVRMRPYLLSKSVYRESLRFQMRISQRWSTFVHWRSPRR TIFSSRCQRFSHMIKSWKK*(-) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Han et al., 2020;Zhang et al., 2019 |