Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d018859_circ_g.3 |
ID in PlantcircBase | zma_circ_002447 |
Alias | circ1143 |
Organism | Zea mays |
Position | chr7: 7542323-7545678 JBrowse» |
Reference genome | AGPv4.38 |
Type | ui-circRNA |
Identification method | CIRI |
Parent gene | Zm00001d018859 |
Parent gene annotation |
Ubiquitin carboxyl-terminal hydrolase 13 |
Parent gene strand | - |
Alternative splicing | Zm00001d018859_circ_g.1 Zm00001d018859_circ_g.2 Zm00001d018859_circ_g.4 Zm00001d018859_circ_g.5 Zm00001d018859_circ_g.6 Zm00001d018859_circ_g.7 |
Support reads | 2 |
Tissues | seedling leaves |
Exon boundary | No-Yes |
Splicing signals | CT-TA |
Number of exons covered | Zm00001d018859_T023:6 Zm00001d018859_T003:6 Zm00001d018859_T022:6 Zm00001d018859_T030:5 Zm00001d018859_T015:6 Zm00001d018859_T005:6 Zm00001d018859_T001:6 Zm00001d018859_T042:6 Zm00001d018859_T033:6 Zm00001d018859_T010:4 Zm00001d018859_T031:6 Zm00001d018859_T038:6 Zm00001d018859_T008:6 Zm00001d018859_T020:6 Zm00001d018859_T027:6 Zm00001d018859_T013:6 Zm00001d018859_T026:6 Zm00001d018859_T041:5 Zm00001d018859_T011:6 Zm00001d018859_T032:6 Zm00001d018859_T028:6 Zm00001d018859_T017:6 Zm00001d018859_T002:6 Zm00001d018859_T018:6 Zm00001d018859_T004:6 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.003650179 |
Functional Information | |
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Coding potential | N |
Potential coding position |
NA |
Potential amino acid sequence |
NA |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chen et al., 2017b |