Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d018859_circ_g.1 |
ID in PlantcircBase | zma_circ_002446 |
Alias | circ1551 |
Organism | Zea mays |
Position | chr7: 7539739-7542379 JBrowse» |
Reference genome | AGPv4.38 |
Type | ue-circRNA |
Identification method | CIRCexplor2 |
Parent gene | Zm00001d018859 |
Parent gene annotation |
Ubiquitin carboxyl-terminal hydrolase 13 |
Parent gene strand | - |
Alternative splicing | Zm00001d018859_circ_g.2 Zm00001d018859_circ_g.3 Zm00001d018859_circ_g.4 Zm00001d018859_circ_g.5 Zm00001d018859_circ_g.6 Zm00001d018859_circ_g.7 |
Support reads | 5 |
Tissues | seedling leaves |
Exon boundary | No-Yes |
Splicing signals | CT-TA |
Number of exons covered | Zm00001d018859_T015:8 Zm00001d018859_T032:8 Zm00001d018859_T001:8 Zm00001d018859_T003:8 Zm00001d018859_T022:8 Zm00001d018859_T030:8 Zm00001d018859_T011:8 Zm00001d018859_T005:8 Zm00001d018859_T013:8 Zm00001d018859_T020:8 Zm00001d018859_T017:8 Zm00001d018859_T027:8 Zm00001d018859_T008:8 Zm00001d018859_T023:7 Zm00001d018859_T033:8 Zm00001d018859_T038:8 Zm00001d018859_T018:8 Zm00001d018859_T031:8 Zm00001d018859_T028:8 Zm00001d018859_T010:8 Zm00001d018859_T002:8 Zm00001d018859_T004:8 Zm00001d018859_T026:8 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.007478228 |
Functional Information | |
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Coding potential | N |
Potential coding position |
NA |
Potential amino acid sequence |
NA |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chen et al., 2017b |