Detail information of 5_circ_ag.2


General Information
CircRNA Name 5_circ_ag.2
ID in PlantcircBase ath_circ_037842
Alias At_ciR175
Organism Arabidpsis thaliana
Position chr5: 4094746-4099371  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method CIRI, find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing 5_circ_ag.2 5_circ_ag.3 5_circ_ag.4 AT5G12950_circ_g.1 AT5G12950_circ_g.3 AT5G12950_circ_g.4 5_circ_ag.5 5_circ_ag.6 5_circ_ag.7 5_circ_ag.8 5_circ_ag.9 5_circ_ag.10
Support reads 62/179
Tissues leaf/root, leaf, aerial, inflorescences, whole_plant
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCAGGCCGATGATATTAGTGGATTCCACGCTAATACACATATTCCCATCGTCGTTGGATCCCAA
CAACGGTATGAAATCACTGGTGATCTACTCCATAAGgaaatctcgatgttctttatggacattt
ttaatgcttctcacagctatgcaacaggaggaacatcagtcagtgagttctggtactaccatta
cctgactt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GAAATCTCGATGTTCTTTATGGACATTTTTAATGCTTCTCACAGCTATGCAACAGGAGGAACAT
CAGTCAGTGAGTTCTGGTACTACCATTACCTGACTTTAGTCTTTGGTTCATTGTAACATGACTT
TTTGTTTTAAGTTCTAACCATGATTTGGGAATGGTAATATTAGGCAAGATCCCAAGAGAATGGC
GACTGCACTGCAAACTGAAAACGAGGAATCATGTACTACTTATAACATGCTCAAGGTAGGATTT
TAAACTTTTCCCCCTCTTTCTATTTGCTCAAGGTAACATACTAACATATCAACACTTGTACAAT
TTCAGGTCTCTAGGAATCTGTTCAGATGGACAAAAGAGGTTAGCTATGCAGACTATTACGAGCG
CGCCTTGACCAACGGCGTGTTGGGAATTCAAAGAGGAACCCAGCCTGGACTGATGATCTACATG
CTCCCATTAGGTAAAGGTGTTTCTAAGGCTGTGACTTATCACGGTTGGGGAACACCTTATGATT
CCTTCTGGTGTTGCTATGGCACTGGTAAACTCTTAACCACAATTCATCTGGTTTTCTACATTTT
TGTAAGATACAAAAGTAAGATAAATTTTGAGGGTCTTTTTTTGTTTCTGTCCACAGGAATTGAA
TCCTTCTCAAAACTGGGAGATTCCATATATTTTCAAGAAGATGGTGCAACTCCAGCTCTTTATG
TCACCCAATATATATCAAGCTCACTTGATTGGAAATCTGCTGGTCTTTCAATATCTCAGAAAGT
TAATCCTGTTGTGTCGTGGGATCCGTACATGCGTGTGACATTCACTCTTTCTTCTTCCAAAGTG
GTAAAACTTTTGCACAACTTGATGCAACATGTTACATTGAAGAAAGAGTCTGATGGATCCAATT
TTGTTGCAGGGAGTGGCGAAGGAGTCGACTTTGAATCTAAGAATTCCTGTTTGGACTAACTCTA
TAGGTGCCAAAGTATCTTTGAATGGGCGACCCTTAAACGTACCAACTTCAGGTGATTTGAGCAT
TAGGTTCTAAAAAGCAGAACTCGCTTGACTGTTACAGTCTCTAGTTTGTGAAATGAGAATCATA
TTGTACCTGTCTTTTTCTTTGCAGGTAATTTCCTATCAATCAAACAGAAATGGAAATCTGGTGA
TCAAGTAACCATGGAGCTACCAATGAGTATCAGAACCGAAGCTATAAAAGGTATAAACACACAG
TTTTGCTTTTGTAGACTGGTACCCTTACTCCGGCAATCTATAACTAGCAGTATATGTATAAATT
GTATGCAACTCTGTTTTGACATTATTTTGTGAGTATTTCAGATGATCGGCCAGAGTACGCATCT
CTTCAAGCCATACTCTATGGCCCCTACTTGTTAGCCGGACACACGAGCAGGGACTGGAGCATCA
CAACTCAGGCTAAACCTGGAAAATGGATAACCCCTATACCTGAAACTCAAAACAGTTACCTTGT
CACACTCTCACAACAATCTGGAAACGTATCTTACGTGTTTTCAAATAGCAACCAAACCATCACA
ATGAGAGTATCACCCGAGCCAGGGACACAAGATGCCGTTGCAGCGACTTTCAGGCTCGTGACTG
ATAATTCTAAACCACGGATTTCGGGTCCAGAAGGACTAATTGGAAGGCTGGTCATGCTTGAGCC
GTTTGATTTCCCTGGCATGATTGTAAAGCAAGCAACTGATAGCTCCCTCACAGTTCAAGCTTCT
TCTCCTAGTGACAAAGGAGCTTCTAGCTTTCGGTTAGTATCTGGACTTGACGGGAAGCTAGGAA
GCGTTTCGTTAAGACTAGAGAGCAAAAAAGGTTGTTTTGTGTACAGCGATCAAACCCTAAAGCA
AGGGACAAAACTAAGGCTAGAATGTGGTTCGGATGCGACTGATGAGAAGTTTAAAGAGGCAGCA
AGCTTTAGTTTAAAGACAGGAATGCATCAATACAATCCAATGAGTTTCGTGATGAGCGGAACAC
AGAGGAACTTTGTGTTATCGCCATTGTTTAGCTTAAGAGATGAAACATACAATGTGTACTTCAG
TGTGCAAACTTGAAGAAAGAAACCCTTATTGGGTGAAAATATAAGAAAGAAAAGTCTCATTTGA
AATATAGACATGTGTTTAGATGTTTAGCCTCTTAGGTTTGTTTGTGATTTTGTGTTCTGCAATG
TCATCTAAAAATGTATGTTGCTGTTACAATAAATATAAACAAATGTGTTTTTATAAATTGTGCT
AACGATGAATCCATGTCTTTCTTTATATTCTAAATATAGAGTGGAGAATAGTGTGTTGCCTTGA
GCTTTCATGAAATAATATTCTCATATGTGATCTGTTGCAGAAATTAGAATACCATAGTTATTGT
ATCAAAATATCCAACACATGAAAAGTAAAATATCCAACAAAATCACACGCATAAACATTACTTA
CGAATACGATAGTTATTGTGTTTATGCGTGTGATTTTCACTTTGGTGGAGATAACTTCTATAGA
AGAGGGGAGAATATTATACAGTATTTTGGAAATATGTTATAATTTTGGAGAAATCACAAATCAA
AGTTTATAATTACATTCAGGGAGATTTTACAAGATTATAGAAAAACTTTATAAGATTTTGGAAA
AACTAATCATAGAAATTATACAAAATTCTCTAGTAATCATTTAAAATCTTTGACATATCTACTT
TCTATATTTTTTAAAAGTCATTAAAATTCTTTCAAAATCACAAACCAATAACACCCCCTTAATC
TTTTTTTACAACAAATCCTCCTCTGTTTTTATCCAAATCCTCTCTGTTTTTATCCAAATCCTCC
TCTGTTTTTCTCTTTCACTTGATTGAATTCTTTTTTTAGCAGACATTGCTTCAATCGTTAGAAA
ATCTATTTTTGGCACACATTTTCTTTAGAAATCTTTTGCTTTATAAACATCTCTTCTCATTATT
TTCTTCTTCCATTTCAAATCCCCTCTCCCTAACAGTTTTGAGTCTCTTGGATTCTGAACGTGGG
ATCTGGGGATTTGAATAGTTACACTTTTTTGTTTATGAAAAAACATACGATGAAGTCTGGTGTG
ATCATAACCATTGCTCTGTTATTATACACAAGCTTTCTTCTTGTTTGTCTGGCGAAAGAGTGTA
CAGACATTCCTACGAAGCTCTCATCGCATACTCTCCGCAGCGAGCTTCTGCAATCACAGAACGC
AAATTTGAAGTCAGAGGAGTTCTCTCATTACCATTTAACTCCAACTGATGACTCTGCTTGGTCT
ACTTTGTTGCCAAGGAAGATGTTGAAAGAAGAGACTGATGATTTTGCTTGGACTATGTTGTATA
GAAAGTTCAAGGACTCTAATTCCTCTGGTAACTTTCTCAAGGATGTCTCTTTGCACGACGTTAG
GCTGGACCCGAGCTCTTTCCATTGGAGGGCTCAGCAGACAAACCTTGAGTATCTATTGATGTTG
GATGTTGATGGTTTGGCCTATAACTTCCGTAAAGAAGCTGGTCTTAATGCTCCTGGAGTTCCCT
ATGGAGGATGGGAGAAACCAGATAGTGAACTCCGTGGCCATTTTGTCGGTATAAACCTCTGCCT
TTTTCCCCAATTCAATACACTTTCTTGATTCATGCTGTTGATAGTATGCAGGAAAAGGTTTTGA
GATTTGATGTTTGGTATAGATTGCATAGGCCCTTATAGGAATCACCTTTTGACATTTCATAGAC
ACTTGAAAGGATTTTAACTCTTACATTGCATAGAACCTTAAAGGAATGACCTTTTAGTTGATGG
CTCAAAAATCTGTCTGTTTGTTTTGAAGGTCACTATTTGAGTGCAACAGCTTATATGTGGGCAA
GTACTCATAACGAAACTCTCAAGGCGAAAATGACAGCTCTTGTCTCAGCTCTAGCGGAATGCCA
GCAGAAATATGGCACAGGATATCTCTCAGCTTTCCCTTCCAGTTTTTTCGACCGGTTTGAAGCT
ATAACACATGTTTGGGCTCCTTACTATACCATTCACAAGGTGAATAGTCAGACCCTTTGACTGA
GTTGAAGATTGATATGCTTATGTTTTGCAAGAGAGTAACATCTCTGTCTTAATTTTGACAGATT
TTGGCCGGCCTGGTGGATCAATACAAGTTGGCTGGGAATACTCAAGCTTTAAAGATGGCAACAG
GGATGGCTGATTACTTTTATGGCCGTGTTCAAAATGTGATAAAGAAGTACAGTGTTGAACGACA
TTGGCTATCACTAAACGAAGAGACTGGTGGCATGAATGATGTTCTTTATCAGCTATACAGCATC
ACTGTGAGTTAAAATCTTATCAGACTCTAAACTCCAACCTTAGATTTCTATCTAGCTTTGTGTT
ATATCATAGTGTTTTGGACTCTGCAGAGAGATTCCAAGTATTTGTTTCTCGCACATCTCTTTGA
CAAGCCTTGCTTTCTCGGAGTCCTCGCAATTCAGGTAATTTACTTGATGATTAGCTTGAAGCCT
TGAAGAGATGTGAATGGTAAGGTCACATAACTTGACATGTTTGTTTGCAGGCCGATGATATTAG
TGGATTCCACGCTAATACACATATTCCCATCGTCGTTGGATCCCAACAACGGTATGAAATCACT
GGTGATCTACTCCATAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.63627662
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017