Plant Circular RNA Database

Detail information of Os06g0726800_circ_g.3

			
						 General Information
					
						CircRNA Name
						Os06g0726800_circ_g.3
					
						ID in PlantcircBase
						osa_circ_032435
					
						Alias
						Os_ciR1478
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr6: 30915537-30917983  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							ue-circRNA							
									
						Identification method
						find_circ
					
						Parent gene
						
							Os06g0726800						
					
						Parent gene annotation
						
							G2/mitotic-specific cyclin 2 (B-like cyclin) (CycOs2). (Os06t072
6800-01)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os06g0726800_circ_g.1 Os06g0726800_circ_g.2 Os06g0726800_circ_g.4 Os06g0726800_circ_g.5 Os06g0726800_circ_g.6 Os06g0726800_circ_g.7 Os06g0726800_circ_g.8 Os06g0726800_circ_g.9 Os06g0726800_circ_g.10 Os06g0726800_circ_g.11 Os06g0726800_circ_g.12 Os06g0726800_circ_g.13 Os06g0726800_circ_g.14 Os06g0726800_circ_g.15 						
					
						Support reads
						10
					
						Tissues
						root
					
						Exon boundary  
						
							No-No							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os06t0726800-01:11

General Information
CircRNA Name	Os06g0726800_circ_g.3
ID in PlantcircBase	osa_circ_032435
Alias	Os_ciR1478
Organism	Oryza sativa
Position	chr6: 30915537-30917983 JBrowse»
Reference genome	IRGSP-1.0.38
Type	ue-circRNA
Identification method	find_circ
Parent gene	Os06g0726800
Parent gene annotation	G2/mitotic-specific cyclin 2 (B-like cyclin) (CycOs2). (Os06t072 6800-01)
Parent gene strand	-
Alternative splicing	Os06g0726800_circ_g.1 Os06g0726800_circ_g.2 Os06g0726800_circ_g.4 Os06g0726800_circ_g.5 Os06g0726800_circ_g.6 Os06g0726800_circ_g.7 Os06g0726800_circ_g.8 Os06g0726800_circ_g.9 Os06g0726800_circ_g.10 Os06g0726800_circ_g.11 Os06g0726800_circ_g.12 Os06g0726800_circ_g.13 Os06g0726800_circ_g.14 Os06g0726800_circ_g.15
Support reads	10
Tissues	root
Exon boundary	No-No "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os06t0726800-01:11

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GCAAACAAAGGCCACACAGAACAAGCCTGAATTCCAGATGCGGATAAAGTTGGTACCTTGGTTA
AAGTTCTCAGATCTCATGTTCTCCATTGCTGACGTTctaaatgtgctgtactttctatgaactc
cagtaagcttcccatgtcctgctttttggtggagctcaaccatcatcttggagcactccctgca
aggcaaag

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 111
Transcript exons: 30915537-30915616,30917953-30917983
CTAAATGTGCTGTACTTTCTATGAACTCCAGTAAGCTTCCCATGTCCTGCTTTTTGGTGGAGCT
CAACCATCATCTTGGACTCAGATCTCATGTTCTCCATTGCTGACGTT
						
					

						Genomic sequence
						
							CTAAATGTGCTGTACTTTCTATGAACTCCAGTAAGCTTCCCATGTCCTGCTTTTTGGTGGAGCT
CAACCATCATCTTGGAGCACTCCCTGCAAGGCAAAGATAACAAAATAACTGTCAGTACAAGAGG
ACAGTTTTAGTTTATATGGTACTGAAATGCAGGAATTGGGGACAGTTTTGGTACATCAGCTGTT
CTTCAGAGTATTTTGTATGCAGCTCACAGCATTTGTTCCAGGACTTGAACCCATTAATGGTGCA
CTGAGCAGTGTAGATGGCAGCAGCCGCCAGCATTGACGGCTGGAATTTGAGCATCTCATACTCG
ACAAGGCTCAGCTCAATTATGAAGAAAGACATGAGCTCAAGCTGTTTCAGTAGGCACTTGGGTC
AGACAATGCACTCACATAGCAAAGCTACTGTATATCAATACAAAGATGGATGCACCAGTGTGTT
TTTGTCCTACCTTCTTGTCAGATTGTGCAGCCTTGAGGAACCTTCTCATGAAACAGTATGGAGT
TGGAACTGACATATCAAACTGAAGAGTGTTTACAATCATCCTCTCCTGCACAAATACAAATGAC
ACTTTCACTTCTCTGAACATATATCGATCGCTCTGGAAAAAAACAGGTACAGTATTCTTCTTAC
CATTTCGAGAATATCTGTTCTTGTGTAGGCGCGGTCGCAGATTAGGATAAGATCCTCCACTACA
GGAACGCTCACTTCTTCATACTTGCAGGCGAGCAGCATGGCAGTCACGCCAACCAACTGAAGCT
TCTTTCGCACCACATTTTCGCGAGCCAAGAATCGGTCTATGATATTCACAGTAAGGAAGAGGGT
CTCATCCAATAGCTCTAACTTGTAATGCACCTGCATTGGTCAAGTTATTGTCAGAAACTAAGAA
TTCCCAAACCACATGATGAATATGCTGAATGAAATACTTGCCTCTATCAGCCAATCGATGAGAA
TGCCGCGCATCTTCTCATTTATGTCATTTTGGCTCAACATGTAATTAGGAGAGACACAGCTCAA
ACCCTGTGCACACAGAATTTGCAATGAGATTGATTACCCAGGTAACACATCAAAACAACTTCTC
AGGTTCCACAAAAAAGTTACCTCACTCCTCCTGTAGAAGCTGTAAATTTCATCAACATATTCAA
CTACTGCAAGGGAGTTATTTGCATCACAGCTGTCAATATCAGGTGCTGCCTCCTCAATGTCTTC
CATCTCAATTTCTTTCAGTTCAGAACCCATCTGAAATAACAAGTTGGACTGCTGATTAGTGATG
AATCCTACCTACCAAGTGCTAATTGCTAAATAATGCATTCCAAGTATATCATGTCATTTACCAC
TTCGTCCATCTCAGACATCATTGGCAATGGCAAATCATCAGATGTGATCTTGGTGCACTCCATA
TCTGCTGGACCATGAAATGCAGAATCTGCTGTCCTTTTTTGCCTCTCACTTCCAATGGGTGCCT
GCCACAATAAAGACAGCTTCTTCAGACTACTAGTATTTGTTCAAAGCAGCTCACAGAATTGTTG
TTCTGCTATGCATCTGTAAATTTACTAGTTATGGAATATGTAAATAGAAGTCAGAAAACTGTAG
GCGTTAAGTCCTAGAGCTGTCATTCGAACTAAATTCTACATCACTGGATTAAATTAGAAGATGC
AGTGTACAGGCAACATTAATATCTCATTTGCAACTTTCCGATTTACCATTTCGAGTTTCTGCAT
GTAAATCTGAATAACCACATGTACTAATTCAAAGTTAAACAAAATCAAATAGAAAGAGCACAGC
ATTTTCAGAGCATATCAAAACAACAGCAAACCTAAAGAACAATTAGGAAAGCATTGGATATATG
ATGGGGAAGTTGACATATCAGAACAGCAGCAGTATCAATATAGCAACAACTTTAATATGGCTTT
CATGAGTAATTACCAGGGGAGCACTGGAGGGTTGGTTTGCCAGTGTTGCAGCAAATTTCCTGTC
AAAAAATCAAACTTATCACAAAACATTTCACTTAATTCAGTACAGAACGGTAAGATCAAGAACA
GCTCAAACCTCGTCATAGGACGGTGTCCAGCTTGGTTCTTAGCGGCAGGTTTACTGAAGCATGT
CAAGAAATTCAGACCCATTAGAGAAACTGTAAAAGCAGATTAGAAATCAAAGTTGAAACAAAGG
CTCGGCGGAATTACTCTAGCAAACCCCTCTTGCTCACAGCCATGTGCTGGTGAGGTGCTCCGAT
GATGTTCTTGATGTCCCGCAGAGCCCTCCTGTTGGTGTTTGCCATCTCGGGCGCATGCTTGACG
CCCTCCATTGAAACACCTTCGCCCAAATTTACATGTTAGAGCAGCAAACAAAGGCCACACAGAA
CAAGCCTGAATTCCAGATGCGGATAAAGTTGGTACCTTGGTTAAAGTTCTCAGATCTCATGTTC
TCCATTGCTGACGTT
						
					

			
		

Sequences
Splice junction sequence	GCAAACAAAGGCCACACAGAACAAGCCTGAATTCCAGATGCGGATAAAGTTGGTACCTTGGTTA AAGTTCTCAGATCTCATGTTCTCCATTGCTGACGTTctaaatgtgctgtactttctatgaactc cagtaagcttcccatgtcctgctttttggtggagctcaaccatcatcttggagcactccctgca aggcaaag
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 111 Transcript exons: 30915537-30915616,30917953-30917983 CTAAATGTGCTGTACTTTCTATGAACTCCAGTAAGCTTCCCATGTCCTGCTTTTTGGTGGAGCT CAACCATCATCTTGGACTCAGATCTCATGTTCTCCATTGCTGACGTT
Genomic sequence	CTAAATGTGCTGTACTTTCTATGAACTCCAGTAAGCTTCCCATGTCCTGCTTTTTGGTGGAGCT CAACCATCATCTTGGAGCACTCCCTGCAAGGCAAAGATAACAAAATAACTGTCAGTACAAGAGG ACAGTTTTAGTTTATATGGTACTGAAATGCAGGAATTGGGGACAGTTTTGGTACATCAGCTGTT CTTCAGAGTATTTTGTATGCAGCTCACAGCATTTGTTCCAGGACTTGAACCCATTAATGGTGCA CTGAGCAGTGTAGATGGCAGCAGCCGCCAGCATTGACGGCTGGAATTTGAGCATCTCATACTCG ACAAGGCTCAGCTCAATTATGAAGAAAGACATGAGCTCAAGCTGTTTCAGTAGGCACTTGGGTC AGACAATGCACTCACATAGCAAAGCTACTGTATATCAATACAAAGATGGATGCACCAGTGTGTT TTTGTCCTACCTTCTTGTCAGATTGTGCAGCCTTGAGGAACCTTCTCATGAAACAGTATGGAGT TGGAACTGACATATCAAACTGAAGAGTGTTTACAATCATCCTCTCCTGCACAAATACAAATGAC ACTTTCACTTCTCTGAACATATATCGATCGCTCTGGAAAAAAACAGGTACAGTATTCTTCTTAC CATTTCGAGAATATCTGTTCTTGTGTAGGCGCGGTCGCAGATTAGGATAAGATCCTCCACTACA GGAACGCTCACTTCTTCATACTTGCAGGCGAGCAGCATGGCAGTCACGCCAACCAACTGAAGCT TCTTTCGCACCACATTTTCGCGAGCCAAGAATCGGTCTATGATATTCACAGTAAGGAAGAGGGT CTCATCCAATAGCTCTAACTTGTAATGCACCTGCATTGGTCAAGTTATTGTCAGAAACTAAGAA TTCCCAAACCACATGATGAATATGCTGAATGAAATACTTGCCTCTATCAGCCAATCGATGAGAA TGCCGCGCATCTTCTCATTTATGTCATTTTGGCTCAACATGTAATTAGGAGAGACACAGCTCAA ACCCTGTGCACACAGAATTTGCAATGAGATTGATTACCCAGGTAACACATCAAAACAACTTCTC AGGTTCCACAAAAAAGTTACCTCACTCCTCCTGTAGAAGCTGTAAATTTCATCAACATATTCAA CTACTGCAAGGGAGTTATTTGCATCACAGCTGTCAATATCAGGTGCTGCCTCCTCAATGTCTTC CATCTCAATTTCTTTCAGTTCAGAACCCATCTGAAATAACAAGTTGGACTGCTGATTAGTGATG AATCCTACCTACCAAGTGCTAATTGCTAAATAATGCATTCCAAGTATATCATGTCATTTACCAC TTCGTCCATCTCAGACATCATTGGCAATGGCAAATCATCAGATGTGATCTTGGTGCACTCCATA TCTGCTGGACCATGAAATGCAGAATCTGCTGTCCTTTTTTGCCTCTCACTTCCAATGGGTGCCT GCCACAATAAAGACAGCTTCTTCAGACTACTAGTATTTGTTCAAAGCAGCTCACAGAATTGTTG TTCTGCTATGCATCTGTAAATTTACTAGTTATGGAATATGTAAATAGAAGTCAGAAAACTGTAG GCGTTAAGTCCTAGAGCTGTCATTCGAACTAAATTCTACATCACTGGATTAAATTAGAAGATGC AGTGTACAGGCAACATTAATATCTCATTTGCAACTTTCCGATTTACCATTTCGAGTTTCTGCAT GTAAATCTGAATAACCACATGTACTAATTCAAAGTTAAACAAAATCAAATAGAAAGAGCACAGC ATTTTCAGAGCATATCAAAACAACAGCAAACCTAAAGAACAATTAGGAAAGCATTGGATATATG ATGGGGAAGTTGACATATCAGAACAGCAGCAGTATCAATATAGCAACAACTTTAATATGGCTTT CATGAGTAATTACCAGGGGAGCACTGGAGGGTTGGTTTGCCAGTGTTGCAGCAAATTTCCTGTC AAAAAATCAAACTTATCACAAAACATTTCACTTAATTCAGTACAGAACGGTAAGATCAAGAACA GCTCAAACCTCGTCATAGGACGGTGTCCAGCTTGGTTCTTAGCGGCAGGTTTACTGAAGCATGT CAAGAAATTCAGACCCATTAGAGAAACTGTAAAAGCAGATTAGAAATCAAAGTTGAAACAAAGG CTCGGCGGAATTACTCTAGCAAACCCCTCTTGCTCACAGCCATGTGCTGGTGAGGTGCTCCGAT GATGTTCTTGATGTCCCGCAGAGCCCTCCTGTTGGTGTTTGCCATCTCGGGCGCATGCTTGACG CCCTCCATTGAAACACCTTCGCCCAAATTTACATGTTAGAGCAGCAAACAAAGGCCACACAGAA CAAGCCTGAATTCCAGATGCGGATAAAGTTGGTACCTTGGTTAAAGTTCTCAGATCTCATGTTC TCCATTGCTGACGTT

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_016646 osi_circ_016647 						
					
						PMCS
						0.233883146

Conservation Information
Conserved circRNAs	osi_circ_016646 osi_circ_016647
PMCS	0.233883146

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ye et al., 2015

circRNA

Detail information of Os06g0726800_circ_g.3

Address

Any questions?

Supported by