Detail information of Os06g0726800_circ_g.4


General Information
CircRNA Name Os06g0726800_circ_g.4
ID in PlantcircBase osa_circ_032436
Alias Os_ciR450
Organism Oryza sativa
Position chr6: 30915537-30917986  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method find_circ
Parent gene Os06g0726800
Parent gene annotation G2/mitotic-specific cyclin 2 (B-like cyclin) (CycOs2). (Os06t072
6800-01)
Parent gene strand -
Alternative splicing Os06g0726800_circ_g.1 Os06g0726800_circ_g.2 Os06g0726800_circ_g.3 Os06g0726800_circ_g.5 Os06g0726800_circ_g.6 Os06g0726800_circ_g.7 Os06g0726800_circ_g.8 Os06g0726800_circ_g.9 Os06g0726800_circ_g.10 Os06g0726800_circ_g.11 Os06g0726800_circ_g.12 Os06g0726800_circ_g.13 Os06g0726800_circ_g.14 Os06g0726800_circ_g.15
Support reads 68
Tissues root
Exon boundary   No-Yes
Splicing signals   CT-AC
Number of exons covered Os06t0726800-01:11
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AACAAAGGCCACACAGAACAAGCCTGAATTCCAGATGCGGATAAAGTTGGTACCTTGGTTAAAG
TTCTCAGATCTCATGTTCTCCATTGCTGACGTTCTActaaatgtgctgtactttctatgaactc
cagtaagcttcccatgtcctgctttttggtggagctcaaccatcatcttggagcactccctgca
aggcaaag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTAAATGTGCTGTACTTTCTATGAACTCCAGTAAGCTTCCCATGTCCTGCTTTTTGGTGGAGCT
CAACCATCATCTTGGAGCACTCCCTGCAAGGCAAAGATAACAAAATAACTGTCAGTACAAGAGG
ACAGTTTTAGTTTATATGGTACTGAAATGCAGGAATTGGGGACAGTTTTGGTACATCAGCTGTT
CTTCAGAGTATTTTGTATGCAGCTCACAGCATTTGTTCCAGGACTTGAACCCATTAATGGTGCA
CTGAGCAGTGTAGATGGCAGCAGCCGCCAGCATTGACGGCTGGAATTTGAGCATCTCATACTCG
ACAAGGCTCAGCTCAATTATGAAGAAAGACATGAGCTCAAGCTGTTTCAGTAGGCACTTGGGTC
AGACAATGCACTCACATAGCAAAGCTACTGTATATCAATACAAAGATGGATGCACCAGTGTGTT
TTTGTCCTACCTTCTTGTCAGATTGTGCAGCCTTGAGGAACCTTCTCATGAAACAGTATGGAGT
TGGAACTGACATATCAAACTGAAGAGTGTTTACAATCATCCTCTCCTGCACAAATACAAATGAC
ACTTTCACTTCTCTGAACATATATCGATCGCTCTGGAAAAAAACAGGTACAGTATTCTTCTTAC
CATTTCGAGAATATCTGTTCTTGTGTAGGCGCGGTCGCAGATTAGGATAAGATCCTCCACTACA
GGAACGCTCACTTCTTCATACTTGCAGGCGAGCAGCATGGCAGTCACGCCAACCAACTGAAGCT
TCTTTCGCACCACATTTTCGCGAGCCAAGAATCGGTCTATGATATTCACAGTAAGGAAGAGGGT
CTCATCCAATAGCTCTAACTTGTAATGCACCTGCATTGGTCAAGTTATTGTCAGAAACTAAGAA
TTCCCAAACCACATGATGAATATGCTGAATGAAATACTTGCCTCTATCAGCCAATCGATGAGAA
TGCCGCGCATCTTCTCATTTATGTCATTTTGGCTCAACATGTAATTAGGAGAGACACAGCTCAA
ACCCTGTGCACACAGAATTTGCAATGAGATTGATTACCCAGGTAACACATCAAAACAACTTCTC
AGGTTCCACAAAAAAGTTACCTCACTCCTCCTGTAGAAGCTGTAAATTTCATCAACATATTCAA
CTACTGCAAGGGAGTTATTTGCATCACAGCTGTCAATATCAGGTGCTGCCTCCTCAATGTCTTC
CATCTCAATTTCTTTCAGTTCAGAACCCATCTGAAATAACAAGTTGGACTGCTGATTAGTGATG
AATCCTACCTACCAAGTGCTAATTGCTAAATAATGCATTCCAAGTATATCATGTCATTTACCAC
TTCGTCCATCTCAGACATCATTGGCAATGGCAAATCATCAGATGTGATCTTGGTGCACTCCATA
TCTGCTGGACCATGAAATGCAGAATCTGCTGTCCTTTTTTGCCTCTCACTTCCAATGGGTGCCT
GCCACAATAAAGACAGCTTCTTCAGACTACTAGTATTTGTTCAAAGCAGCTCACAGAATTGTTG
TTCTGCTATGCATCTGTAAATTTACTAGTTATGGAATATGTAAATAGAAGTCAGAAAACTGTAG
GCGTTAAGTCCTAGAGCTGTCATTCGAACTAAATTCTACATCACTGGATTAAATTAGAAGATGC
AGTGTACAGGCAACATTAATATCTCATTTGCAACTTTCCGATTTACCATTTCGAGTTTCTGCAT
GTAAATCTGAATAACCACATGTACTAATTCAAAGTTAAACAAAATCAAATAGAAAGAGCACAGC
ATTTTCAGAGCATATCAAAACAACAGCAAACCTAAAGAACAATTAGGAAAGCATTGGATATATG
ATGGGGAAGTTGACATATCAGAACAGCAGCAGTATCAATATAGCAACAACTTTAATATGGCTTT
CATGAGTAATTACCAGGGGAGCACTGGAGGGTTGGTTTGCCAGTGTTGCAGCAAATTTCCTGTC
AAAAAATCAAACTTATCACAAAACATTTCACTTAATTCAGTACAGAACGGTAAGATCAAGAACA
GCTCAAACCTCGTCATAGGACGGTGTCCAGCTTGGTTCTTAGCGGCAGGTTTACTGAAGCATGT
CAAGAAATTCAGACCCATTAGAGAAACTGTAAAAGCAGATTAGAAATCAAAGTTGAAACAAAGG
CTCGGCGGAATTACTCTAGCAAACCCCTCTTGCTCACAGCCATGTGCTGGTGAGGTGCTCCGAT
GATGTTCTTGATGTCCCGCAGAGCCCTCCTGTTGGTGTTTGCCATCTCGGGCGCATGCTTGACG
CCCTCCATTGAAACACCTTCGCCCAAATTTACATGTTAGAGCAGCAAACAAAGGCCACACAGAA
CAAGCCTGAATTCCAGATGCGGATAAAGTTGGTACCTTGGTTAAAGTTCTCAGATCTCATGTTC
TCCATTGCTGACGTTCTA
Conservation Information
Conserved circRNAs osi_circ_016647 osi_circ_016646
PMCS 0.237158663
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015