Detail information of Os12g0288600_circ_g.8


General Information
CircRNA Name Os12g0288600_circ_g.8
ID in PlantcircBase osa_circ_011156
Alias NA
Organism Oryza sativa
Position chr12: 11068450-11073017  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os12g0288600
Parent gene annotation Conserved hypothetical protein. (Os12t0288600-01)
Parent gene strand -
Alternative splicing Os12g0288600_circ_g.1 Os12g0288600_circ_g.2 Os12g0288600_circ_g.3 Os12g0288600_circ_g.4 Os12g0288600_circ_g.5 Os12g0288600_circ_g.6 Os12g0288600_circ_g.7 Os12g0288600_circ_g.9
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os12t0288600-01:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAACTTTTTGGAACCACTATGATCCTGATCTTGGTGGGCTTTATCCTCGTTGCTGCAACCGGTG
TGCTTTCCAGTGTTTGCCACCTTCAGTTTCTTTTTTctctttcaattgttctttggctttctgt
ctaagttgtcttttgagtttcttacgccgagcacttctagatacctggtaaaacacaggacagc
aaagtgaa
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 325
Transcript exons: 11068450-11068521,11070534-11070603,11072835-11073017
CTCTTTCAATTGTTCTTTGGCTTTCTGTCTAAGTTGTCTTTTGAGTTTCTTACGCCGAGCACTT
CTAGATACCTTTTTAATATCGCTTTGAGTGTTACAATCATCCTCCTTTGTTTCGCTATTCAACT
TGGTTTGGTTGTCCCTCTTTGATATCTGCTCTTTCTCCAAGGTAACATCGGCTTCAGCTAGCAT
CACCTTCTTGGCATCATCGATACATGGTGACTTCAACTTTTTGGAACCACTATGATCCTGATCT
TGGTGGGCTTTATCCTCGTTGCTGCAACCGGTGTGCTTTCCAGTGTTTGCCACCTTCAGTTTCT
TTTTT

Genomic sequence CTCTTTCAATTGTTCTTTGGCTTTCTGTCTAAGTTGTCTTTTGAGTTTCTTACGCCGAGCACTT
CTAGATACCTGGTAAAACACAGGACAGCAAAGTGAACTTTATGCATGTGATAACTAAAATAAAA
TGCACATGCAGAAAAGCATGACTTGTTAATTGAGTCCTATATATCATAATATCACAGGTAAATT
TGAGTGTTGCTACACTGCACGTGAAGTGTGAAATGTCAATTATAGGAAATTATACTTGTGGCGT
GGTCAGCAGTCAGAATTGTGCATGGAGCTTGCTTTTTCAAAGAATTTCTTTATGCCCTTTTTTC
TATAGACTAAAATTGGCAAACAACTACTTCAGAATGAAACAGAAGAAGCTCATTAAATTTTCTG
TGGTTTTCTTTAACTAACTATTCCATAAAGACAACTGCAAAACAGTCCAATTCTAAACAATAAG
TTAGCCAATGGATACATTAAGGTGAGCTTGACATTAGAGCAGCCCTTTTAAAAGCACTGAATTA
ACTTTTTACTATAAATCAATTAAACAGGAAAATACATTTTAACTCCAATTCATGTGATTGTAAT
GCTTGGTACTTCTTTTAATTTGTTGTGCACATCGTACAATTTCCATTCTTGTTCTCATGATTTG
AGTGGTTCTGGTACTTGAAATAAAAATCAATGAAAAATTACAAATCTTATACAAGCACCAACAT
CACTCAATAGATGAATCAGTTACACAAAGATTGACAAAATTATTTTTGTAGCAATCAAAGTGTG
CCCATTCCCGTTGCTATCCCTAACCAATAGGGCAGGAGGAGAAGAGGGAGCCATAGGAGGAGTT
GGGATCAACGAGTAGTTGCAGAGTGAAAAATAGTGCTGTATTTAATCATGTGCCCTCCAAAATC
ATCGATTCGTCATACTGAACACAACCACAAAGAGCCCAAACCAAATTGCTAATCCAAATCATTC
CAATACCAACCGAATGGAGCCCAAACCACAAGACAGTCCAAATCCAACACAGTAGCACGTGTGA
GTTGGCAAGGAGCTGAGGGGACAGAGAAGCTGCAGGTGCAAGAAGTAGCCACACCAGTGAGGAT
GACAAAAATGAGAGCAAGGGGTGAGCATGTAGGAGTTGTGAGGAGCTACAGCAGCGCAATGGCA
TGTAGCAATGGTGGAGGTGGTGGGGAGATGCAGATGACACGATTTCCACCAGTAAAAGGGCGCA
GGATGATTCGGTTTCAGACATCCAGATGAGCCAGTGTAGGGATCTATCACAAGGTAAGGATAAT
AAGGTCACATGTAACATGAGTCGGCATTAGTGACAATGACAGAAGTGATAAATACAGGGATGGA
CACACCTTTTGGAGCTAATAAAGTGATTATGTCATTTTGGTGCTACAAATCTAAAATCGTGGAC
TTTCAACACCACATATCAATTTGCCTTAAAGATCTTAAACATATACAGAATAAAAAAAACACGA
GAAATAGTGTTCACGTGCGTTATTGATGGCGTATTTGCATGTGAACATAACTCAAAGCAGTTGC
AAACTATTTCAACAAAATGATACATGAGAGGGCATTTGAAGGTCAGGAAGTTATATGGTTTTTG
TCCCATTAAAAAATCCTTTTTAGCCAAAGCAGATAATTAACTAACTAGGTTCAGCACCACGCAG
CAATGCAAAACAGGTCTGGTACTGGGCATTAATCACTATGATAAGAAATAAAAGCATGCAAAAA
CAAAGAGAGAATTGATAAATACTACCTCCATCCTCCGTCCCAAAATATAAGGATTTTTAGGGTT
GGACATGGGTATTGAGTAGGTGGAATTAAATGGGGAAGGTTGTGATTGGTTGACAAGAGGAAGT
ACATGGAGAATTGGATGGTGGAAGGTTTCGATTGGTTGAGAAGGGAATGTAGCTGATCAGCTGC
TATATTTTGGGACGGAGGGAATAGATTTTTATTTCTTTTTAAAAGAAAGACTCTCCTTTTGGTT
TACATACAAAAAGAATCATCATCCATAGAGAAAAATAAGCCCAAAAGATTTCAGATTGTTAAAA
CAGTAATCATGCAGTAATTATGACTCAAGCAGAAACCTTTTTAATATCGCTTTGAGTGTTACAA
TCATCCTCCTTTGTTTCGCTATTCAACTTGGTTTGGTTGTCCCTAAGAAATTTCACACATAAAA
TCTGTTACATATTAGAATAAAGAAATCAATACTTTAACCTGAATCATTGCACAAGATGTGAATA
CTTTCATGCAATGCTGCATGTAGAGGCAAGAAGTGAGTAATACAATAATACATCACATACAAAA
TTTTGAATATACTCAATTATTGTCAGCATTATGTTGAATTTATATATAGAATAAACAACATAGC
TTCAAATGAGTTCGAAGGATGGCATAGAAGACATAATATGAATGCCTAATCGTATTCAAGAAAA
AAAATCTGAATGCCTAATTATTGACTTAAATATATATGGGACGTTGTTATGGTCTACACCGATG
TCCTCAGCCTCTCACCATATATGAAATATCATAACATAAGTAATCACTTATCGTGACGTGGACG
CGGAGTTAGCTAAACAAATCCACACATCTTAAATGCACAGAAAAAAAAAAGGAGAAATGTTATA
GTTTATACTTCTAGACCTTTACTAGCATTCATTAACTTCATAAGACATGTGCTACTACATGAAA
GGATTAGAACATTAAAACAAGAGTAGTGCAACTTCACATATGTAAACATGGATTGATTTTGCTT
ACAAATTAATAGTGTCATTTTTCAGTGATAATCACCCAGTAATTATATGTAAACTGGCATGGGA
TTATGCAGCCAACCTTTTGCAGTCTTAGCCATTATTATAGGCAATAACAAACGATATCACTTGA
CAACAAGTATATTAGTTGTCTTGAAAAATACGTTCCAAAAGTATATTTCAGGTTGTTTTACAAA
TAGATTATTACGAAAATCAAAGTTTTGCAATCAAGACAAGAAGTAATATATTTAGTGATCAAGT
GGTACAATCAGAAAATTGCCATTTTTTTACTACTAGCATAGCGCTCATCTTAAGTATCCTCAAC
TCTAAAAATTATATACATACTACGAGATAGGAACCAGATTCACATGTGCATTGCATGCAACTTT
ATTTAAAAAAAAACTTATAGACGACATACACATTACTACAAATGCCCCAAAAGATTACGAGTGA
AAGATAGGGGTAGAGCTAGGGATGGTAAAGGGCCCAACATTTTAGCCTAGAAAATTTGAGGGTT
GGGTCTAAAATGGGGTGGGTTGAACTTTTATACATTTTCACCTAGAAATATAAGGGCTAGGTAG
GATTGTGAAAGAACCCATGGGAATTGACCCATTACCACCCCTAAGTAGAGCACAAAATCACACC
CAATTACTCCAATTAAAAGGACTAAATATATTTTATGCAACCTTTCTATTTTAGTTGATTACTA
TAATTTGCAACAGTGCAGTGTTTAGAAGTTTTTGTAGACACTTGTAATTGCTTATATTAAATAT
TAGCATTTAGCAGTATGCTAACAACACACTTCACATCGAGGAAATCCATAGTAAGTTGAAAGTA
ACTTAACTGCAGAAACACTAAATGTCTAATTTGAACTATGAATGTGACAAAACTATTGCAGTTA
ATTGTTTCCTTTCTAAAAGTAACATAGTTGATAACCGAAAAAACATCATGTATAAGAAAAAAAG
TGAATTGCAATCTGGGTCATCTTTTATTGCCAAAATTTCACTTTGGACCATCCTTTCCCCAATC
TTTTTGCTTTGCATTAGCAAATTTTATGTTTGTTGCACTTTGGACCACCCCAACTATCTTCCTG
GCATTCCTCTGGCATCTTGTATGGCCTGGTGGAGGGAAGACGCCAGGTCACCAGCATGCCAGAG
CCGATGTGCTCGAGGTCATTGATGTGATAAATAAGTGGTTTGGGGTGGTCCAAATTGCAAAAAG
GTAAAATTACCTAGCCCAAAGTGGAAAGATTAGGCAAAGGTGGTCCAAAGCAAAACTTTGGCTA
TGAAAGGTGGATCAAACTCACTCGTAAGAAAATTATCATGCTAAAGGTAAGAATCATATGGCAT
CATATATAAGATATAAAGATAGTAGTTAAAGTGTGGTTTTCATTTGTTATAAATCATGGTCACA
TTAAATCAATCTGAATTGAAGGAAGAAAATAAAGGGTGCTCAACAACTACAGTTTGCAGACTAC
AAGTATCAGATCCTGGTATGCCAGATGCATTAGAATATGAAATATTTGCAGCCAATTACAGAAA
GTAGTTTTATTAGCTTGTATAGATACTTTGCTGGCCAGTATTCATGTTCGTCACAGATAAAACA
GTTTACCTGATTGAAGTGGCATAGTTAACATACCTCTTTGATATCTGCTCTTTCTCCAAGGTAA
CATCGGCTTCAGCTAGCATCACCTTCTTGGCATCATCGATACATGGTGACTTCAACTTTTTGGA
ACCACTATGATCCTGATCTTGGTGGGCTTTATCCTCGTTGCTGCAACCGGTGTGCTTTCCAGTG
TTTGCCACCTTCAGTTTCTTTTTT
Conservation Information
Conserved circRNAs NA
PMCS 0.193035672
Functional Information
Coding potential Y
Potential coding position 11072937-11068478(+)
11072909-11070549(+)
11072886-11072960(-)
Potential amino acid sequence MILILVGFILVAATGVLSSVCHLQFLFSLSIVLWLSV*(+)
MVTSTFWNHYDPDLGGLYPRCCNRCAFQCLPPSVSFFSFNCSLAFCLSCLLSFLRRALLDTFLI
SL*(+)
MLAEADVTLEKEQISKRDNQTKLNSETKEDDCNTQSDIKKVSRSARRKKLKRQLRQKAKEQLKE
KKETEGGKHWKAHRLQQRG*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017