Plant Circular RNA Database

Detail information of Os03g0748000_circ_g.2

			
						 General Information
					
						CircRNA Name
						Os03g0748000_circ_g.2
					
						ID in PlantcircBase
						osa_circ_021873
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr3: 30778250-30780642  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							ei-circRNA							
									
						Identification method
						PcircRNA_finder
					
						Parent gene
						
							Os03g0748000						
					
						Parent gene annotation
						
							YT521-B-like protein family protein. (Os03t0748000-01);Similar t
o YT521-B-like family protein, expressed. (Os03t0748000-02)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Os03g0748000_circ_g.3 Os03g0748000_circ_g.4 Os03g0748000_circ_g.5 Os03g0748000_circ_g.6 Os03g0748000_circ_g.7 						
					
						Support reads
						2
					
						Tissues
						seed
					
						Exon boundary  
						
							No-No							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							AG-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os03t0748000-02:3
Os03t0748000-01:6

General Information
CircRNA Name	Os03g0748000_circ_g.2
ID in PlantcircBase	osa_circ_021873
Alias	NA
Organism	Oryza sativa
Position	chr3: 30778250-30780642 JBrowse»
Reference genome	IRGSP-1.0.38
Type	ei-circRNA
Identification method	PcircRNA_finder
Parent gene	Os03g0748000
Parent gene annotation	YT521-B-like protein family protein. (Os03t0748000-01);Similar t o YT521-B-like family protein, expressed. (Os03t0748000-02)
Parent gene strand	+
Alternative splicing	Os03g0748000_circ_g.3 Os03g0748000_circ_g.4 Os03g0748000_circ_g.5 Os03g0748000_circ_g.6 Os03g0748000_circ_g.7
Support reads	2
Tissues	seed
Exon boundary	No-No "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	AG-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os03t0748000-02:3 Os03t0748000-01:6

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							AAGTGGCATGTTGTCAAGGATGTACCCAACAACATCTTGAAGCACATTACATTGGATAACAACG
ACAATAAGCCTGTGACAAACAGCCGTGACACACAAGagaggctactgacatgatgcagaagctg
tcgttggagagcaagaaggaaggcgccacccctgacgctaccaagaaggtagcttttgctggcg
attcttgt

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							AGAGGCTACTGACATGATGCAGAAGCTGTCGTTGGAGAGCAAGAAGGAAGGCGCCACCCCTGAC
GCTACCAAGAAGGTAGCTTTTGCTGGCGATTCTTGTCTGTGATGTGTTGCTTGTGCCATCCTTT
TTGTTTGTTTGGAGGAGAGGTAGCTAAAAATTATGGTCCTTTTTGTGAATTGCAGCCTGCCGGG
ATGCCCTATGGATCTGCAAGCGCCGGCGATGCGCAGAATGCGGCGTCGCCGGTGGACAGGTCGA
TCACTCCCCTGCTCCAGGAGGCCGTGAATGCCAACATCTTGTATCAGACCAATGGATATGGACC
CTCAGCATATTACTATCCTACTGGTACAAACACCTAGTACTTTGCTGGATAATCAGGTAGTCTA
ATTAAGTGCTGATTTTAATGTTTGTGCGTTCGTGTATATAGGTTATGACGGCTCAGCCAATGAA
TGGGACTCCAGATATGCTGCCCATGATGGAACGGAGATGCCTCCTGTAAGTTAATGCAGTTATT
TATAGTTAGTTCATCACTTTGCGATAGGTATTTTAAGGTGTAATGTGATATCACGAGTTCACCT
GTGCCTAGAGGAGGCTAAGGACCAAATATGGAGATAGAAACCGTGGGGGACATATGTTGTTAAT
TTGGAATTTAATGAATTGCTTGTCTACTCATGCTATGTGTTGGAGATAAATTAACTCGATTCTG
TTACAATGATCCAGCAGAGTGTTTATGGTGACATGTATGGATATGGCTATGCTCCCTATGGCCC
ATATCCTTCTGGTTCTCCTGTCCCAACTGTTGGGCATGATGGCCAGTCATACGGCGCACAGCAT
TACCAGTACCCTGGTCAATATTATCAGCAACCAGCTCCAACCAATGCAAGCCATGGCGTCAATG
CTGTCAATTCTCAGTCTGAGATGCCCTCTGTTGCTGCTCACCAGGCACGTGTTCCGGTTGAATC
AGCAAAAGCTAGTGCCAATGGGACTGCTAATGGGATGGCAAATACTAACAGTAGTTCATTAGCA
CGTAAGCAAACCCATCAAAATGTATCAGTATTAAACAATGGTTCATATGGAGGAGGGACTTTGC
AAGGTGGACCATCTGCTAACAATTATGGTCACAGTGGTCTTCATTCTCCAGTTCAGTGGTATGA
TGGGCCAGTCTACTCTAATGGGCATCAGAGATCAAATACTAATTCCACATCTTATGGTTCTAAC
TCGTATTCAGCAAAAAATCAGAGCCAGCGCCCAACTGCAAACCTCATGGTATGTTCTAGGACTG
TCCAATTCTCCATTGCCCCCCTCCTTCCCCCACTCTTCTTCTTTTTCCATAGCTTCTCAAAGCA
GTATGATTGTCTCACAATTATTTTTTTTTCTGCTTATTAAATGCATTTACCTAGTATTAGATTC
TGCGATTACTGCCTTCCCCTTAAGTTGCACATAGCAAAAATGATAGTGATGCATTATGTGGCTC
TCACAAAGTACAAGTATTAGCCTAAAATATCCATTTGTTTCAGGGTATGCATGCACAGATACCT
TCGTCGGGAATGGGTTTGACATCTCCTAGTTATCATACCAGGATGTACCCAGACAACAGATTAT
ATGGGCAGTATGGTCAGTATGGGAACGCACTTAAAACTGGGCTTGGTTTCGGATCAAATATGTA
CAACTCCAGAAATAATGGACGGTGGGGAATTGTTGATAGCAAGTACAAGCCTAGAGGTCGTGCA
TCTTTTGGTTTTGGCAGTGAGAACCAAGATGGCTTCACTGAGCTTAACAGAGGACCAAGATCTG
GAGGATTCAAGCACCAAAAACAGTTTGGACCTTCTGTCACTATTGCTGTGAAGGGCCAAGCCCT
CCCCTCAGTCGGGAAACAGGAGAATAGTGCCATTCCAGATAAGGGCCAATTCAACCAGGAAGGT
TTTCCAGTAACATACAAAGATGCAAAGTTCTTTGTTATCAAATCTTACAGTGAGGATGATGTGC
ACAAAAGTATAAAATACAATGTGTGGGCAAGCACTCCTAATGGAAACAAGAAGCTGGATGCTGG
ATACCGTGAAGCGCAGGAGAAATCCAGTGAATGCCCAGTCTTCTTGTTCTTCTCTGTAAGTATT
ATTATTACCACATTATGTGATCCATTTGTCCCTCATATCACTCTTTATTGACATTGGGCATGGA
ATATAGGTAAACACAAGTGGCCAGTTTGTTGGTGTTGCTGAAATGGTTGGTCCTGTTGATTTTG
AGAAGACAGTGGATTATTGGCAACAAGACAAGTGGAATGGGTGTTTTCCAATCAAGTGGCATGT
TGTCAAGGATGTACCCAACAACATCTTGAAGCACATTACATTGGATAACAACGACAATAAGCCT
GTGACAAACAGCCGTGACACACAAG
						
					

			
		

Sequences
Splice junction sequence	AAGTGGCATGTTGTCAAGGATGTACCCAACAACATCTTGAAGCACATTACATTGGATAACAACG ACAATAAGCCTGTGACAAACAGCCGTGACACACAAGagaggctactgacatgatgcagaagctg tcgttggagagcaagaaggaaggcgccacccctgacgctaccaagaaggtagcttttgctggcg attcttgt
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	AGAGGCTACTGACATGATGCAGAAGCTGTCGTTGGAGAGCAAGAAGGAAGGCGCCACCCCTGAC GCTACCAAGAAGGTAGCTTTTGCTGGCGATTCTTGTCTGTGATGTGTTGCTTGTGCCATCCTTT TTGTTTGTTTGGAGGAGAGGTAGCTAAAAATTATGGTCCTTTTTGTGAATTGCAGCCTGCCGGG ATGCCCTATGGATCTGCAAGCGCCGGCGATGCGCAGAATGCGGCGTCGCCGGTGGACAGGTCGA TCACTCCCCTGCTCCAGGAGGCCGTGAATGCCAACATCTTGTATCAGACCAATGGATATGGACC CTCAGCATATTACTATCCTACTGGTACAAACACCTAGTACTTTGCTGGATAATCAGGTAGTCTA ATTAAGTGCTGATTTTAATGTTTGTGCGTTCGTGTATATAGGTTATGACGGCTCAGCCAATGAA TGGGACTCCAGATATGCTGCCCATGATGGAACGGAGATGCCTCCTGTAAGTTAATGCAGTTATT TATAGTTAGTTCATCACTTTGCGATAGGTATTTTAAGGTGTAATGTGATATCACGAGTTCACCT GTGCCTAGAGGAGGCTAAGGACCAAATATGGAGATAGAAACCGTGGGGGACATATGTTGTTAAT TTGGAATTTAATGAATTGCTTGTCTACTCATGCTATGTGTTGGAGATAAATTAACTCGATTCTG TTACAATGATCCAGCAGAGTGTTTATGGTGACATGTATGGATATGGCTATGCTCCCTATGGCCC ATATCCTTCTGGTTCTCCTGTCCCAACTGTTGGGCATGATGGCCAGTCATACGGCGCACAGCAT TACCAGTACCCTGGTCAATATTATCAGCAACCAGCTCCAACCAATGCAAGCCATGGCGTCAATG CTGTCAATTCTCAGTCTGAGATGCCCTCTGTTGCTGCTCACCAGGCACGTGTTCCGGTTGAATC AGCAAAAGCTAGTGCCAATGGGACTGCTAATGGGATGGCAAATACTAACAGTAGTTCATTAGCA CGTAAGCAAACCCATCAAAATGTATCAGTATTAAACAATGGTTCATATGGAGGAGGGACTTTGC AAGGTGGACCATCTGCTAACAATTATGGTCACAGTGGTCTTCATTCTCCAGTTCAGTGGTATGA TGGGCCAGTCTACTCTAATGGGCATCAGAGATCAAATACTAATTCCACATCTTATGGTTCTAAC TCGTATTCAGCAAAAAATCAGAGCCAGCGCCCAACTGCAAACCTCATGGTATGTTCTAGGACTG TCCAATTCTCCATTGCCCCCCTCCTTCCCCCACTCTTCTTCTTTTTCCATAGCTTCTCAAAGCA GTATGATTGTCTCACAATTATTTTTTTTTCTGCTTATTAAATGCATTTACCTAGTATTAGATTC TGCGATTACTGCCTTCCCCTTAAGTTGCACATAGCAAAAATGATAGTGATGCATTATGTGGCTC TCACAAAGTACAAGTATTAGCCTAAAATATCCATTTGTTTCAGGGTATGCATGCACAGATACCT TCGTCGGGAATGGGTTTGACATCTCCTAGTTATCATACCAGGATGTACCCAGACAACAGATTAT ATGGGCAGTATGGTCAGTATGGGAACGCACTTAAAACTGGGCTTGGTTTCGGATCAAATATGTA CAACTCCAGAAATAATGGACGGTGGGGAATTGTTGATAGCAAGTACAAGCCTAGAGGTCGTGCA TCTTTTGGTTTTGGCAGTGAGAACCAAGATGGCTTCACTGAGCTTAACAGAGGACCAAGATCTG GAGGATTCAAGCACCAAAAACAGTTTGGACCTTCTGTCACTATTGCTGTGAAGGGCCAAGCCCT CCCCTCAGTCGGGAAACAGGAGAATAGTGCCATTCCAGATAAGGGCCAATTCAACCAGGAAGGT TTTCCAGTAACATACAAAGATGCAAAGTTCTTTGTTATCAAATCTTACAGTGAGGATGATGTGC ACAAAAGTATAAAATACAATGTGTGGGCAAGCACTCCTAATGGAAACAAGAAGCTGGATGCTGG ATACCGTGAAGCGCAGGAGAAATCCAGTGAATGCCCAGTCTTCTTGTTCTTCTCTGTAAGTATT ATTATTACCACATTATGTGATCCATTTGTCCCTCATATCACTCTTTATTGACATTGGGCATGGA ATATAGGTAAACACAAGTGGCCAGTTTGTTGGTGTTGCTGAAATGGTTGGTCCTGTTGATTTTG AGAAGACAGTGGATTATTGGCAACAAGACAAGTGGAATGGGTGTTTTCCAATCAAGTGGCATGT TGTCAAGGATGTACCCAACAACATCTTGAAGCACATTACATTGGATAACAACGACAATAAGCCT GTGACAAACAGCCGTGACACACAAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_005104 osi_circ_013641 						
					
						PMCS
						0.188414894

Conservation Information
Conserved circRNAs	osi_circ_005104 osi_circ_013641
PMCS	0.188414894

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							osa-miR5532 						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	osa-miR5532
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os03g0748000_circ_g.2

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