Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os03g0748000_circ_g.3 |
ID in PlantcircBase | osa_circ_021874 |
Alias | Os03circ26515 |
Organism | Oryza sativa |
Position | chr3: 30778252-30780644 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, KNIFE, PcircRNA_finder, SMALT, Segemehl |
Parent gene | Os03g0748000 |
Parent gene annotation |
YT521-B-like protein family protein. (Os03t0748000-01);Similar t o YT521-B-like family protein, expressed. (Os03t0748000-02) |
Parent gene strand | + |
Alternative splicing | Os03g0748000_circ_g.2 Os03g0748000_circ_g.4 Os03g0748000_circ_g.5 Os03g0748000_circ_g.6 Os03g0748000_circ_g.7 |
Support reads | 3/2 |
Tissues | leaf and panicle/shoot, root, seed |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Os03t0748000-02:3 Os03t0748000-01:6 |
Conservation Information | |
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Conserved circRNAs | osi_circ_005104* osi_circ_013641 |
PMCS | 0.40046895 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
30778264-30778263(+) 30778266-30780591(-) |
Potential amino acid sequence |
MMQKLSLESKKEGATPDATKKPAGMPYGSASAGDAQNAASPVDRSITPLLQEAVNANILYQTNG YGPSAYYYPTGYDGSANEWDSRYAAHDGTEMPPSVYGDMYGYGYAPYGPYPSGSPVPTVGHDGQ SYGAQHYQYPGQYYQQPAPTNASHGVNAVNSQSEMPSVAAHQARVPVESAKASANGTANGMANT NSSSLARKQTHQNVSVLNNGSYGGGTLQGGPSANNYGHSGLHSPVQWYDGPVYSNGHQRSNTNS TSYGSNSYSAKNQSQRPTANLMGMHAQIPSSGMGLTSPSYHTRMYPDNRLYGQYGQYGNALKTG LGFGSNMYNSRNNGRWGIVDSKYKPRGRASFGFGSENQDGFTELNRGPRSGGFKHQKQFGPSVT IAVKGQALPSVGKQENSAIPDKGQFNQEGFPVTYKDAKFFVIKSYSEDDVHKSIKYNVWASTPN GNKKLDAGYREAQEKSSECPVFLFFSVNTSGQFVGVAEMVGPVDFEKTVDYWQQDKWNGCFPIK WHVVKDVPNNILKHITLDNNDNKPVTNSRDTQERLLT*(+) MSVASLVCHGCLSQAYCRCYPM*(-) |
Sponge-miRNAs | osa-miR5532 |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Lu et al., 2015;Chu et al., 2017 |