Detail information of Os03g0748000_circ_g.3


General Information
CircRNA Name Os03g0748000_circ_g.3
ID in PlantcircBase osa_circ_021874
Alias Os03circ26515
Organism Oryza sativa
Position chr3: 30778252-30780644  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, KNIFE, PcircRNA_finder, SMALT, Segemehl
Parent gene Os03g0748000
Parent gene annotation YT521-B-like protein family protein. (Os03t0748000-01);Similar t
o YT521-B-like family protein, expressed. (Os03t0748000-02)
Parent gene strand +
Alternative splicing Os03g0748000_circ_g.2 Os03g0748000_circ_g.4 Os03g0748000_circ_g.5 Os03g0748000_circ_g.6 Os03g0748000_circ_g.7
Support reads 3/2
Tissues leaf and panicle/shoot, root, seed
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os03t0748000-02:3
Os03t0748000-01:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTGGCATGTTGTCAAGGATGTACCCAACAACATCTTGAAGCACATTACATTGGATAACAACGAC
AATAAGCCTGTGACAAACAGCCGTGACACACAAGAGaggctactgacatgatgcagaagctgtc
gttggagagcaagaaggaaggcgccacccctgacgctaccaagaaggtagcttttgctggcgat
tcttgtct
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1646
Transcript exons: 30778252-30778325,30778433-30778592,30778675-30778742,30
778971-30779513,30779765-30780352,30780432-30780644
AGGCTACTGACATGATGCAGAAGCTGTCGTTGGAGAGCAAGAAGGAAGGCGCCACCCCTGACGC
TACCAAGAAGCCTGCCGGGATGCCCTATGGATCTGCAAGCGCCGGCGATGCGCAGAATGCGGCG
TCGCCGGTGGACAGGTCGATCACTCCCCTGCTCCAGGAGGCCGTGAATGCCAACATCTTGTATC
AGACCAATGGATATGGACCCTCAGCATATTACTATCCTACTGGTTATGACGGCTCAGCCAATGA
ATGGGACTCCAGATATGCTGCCCATGATGGAACGGAGATGCCTCCTAGTGTTTATGGTGACATG
TATGGATATGGCTATGCTCCCTATGGCCCATATCCTTCTGGTTCTCCTGTCCCAACTGTTGGGC
ATGATGGCCAGTCATACGGCGCACAGCATTACCAGTACCCTGGTCAATATTATCAGCAACCAGC
TCCAACCAATGCAAGCCATGGCGTCAATGCTGTCAATTCTCAGTCTGAGATGCCCTCTGTTGCT
GCTCACCAGGCACGTGTTCCGGTTGAATCAGCAAAAGCTAGTGCCAATGGGACTGCTAATGGGA
TGGCAAATACTAACAGTAGTTCATTAGCACGTAAGCAAACCCATCAAAATGTATCAGTATTAAA
CAATGGTTCATATGGAGGAGGGACTTTGCAAGGTGGACCATCTGCTAACAATTATGGTCACAGT
GGTCTTCATTCTCCAGTTCAGTGGTATGATGGGCCAGTCTACTCTAATGGGCATCAGAGATCAA
ATACTAATTCCACATCTTATGGTTCTAACTCGTATTCAGCAAAAAATCAGAGCCAGCGCCCAAC
TGCAAACCTCATGGGTATGCATGCACAGATACCTTCGTCGGGAATGGGTTTGACATCTCCTAGT
TATCATACCAGGATGTACCCAGACAACAGATTATATGGGCAGTATGGTCAGTATGGGAACGCAC
TTAAAACTGGGCTTGGTTTCGGATCAAATATGTACAACTCCAGAAATAATGGACGGTGGGGAAT
TGTTGATAGCAAGTACAAGCCTAGAGGTCGTGCATCTTTTGGTTTTGGCAGTGAGAACCAAGAT
GGCTTCACTGAGCTTAACAGAGGACCAAGATCTGGAGGATTCAAGCACCAAAAACAGTTTGGAC
CTTCTGTCACTATTGCTGTGAAGGGCCAAGCCCTCCCCTCAGTCGGGAAACAGGAGAATAGTGC
CATTCCAGATAAGGGCCAATTCAACCAGGAAGGTTTTCCAGTAACATACAAAGATGCAAAGTTC
TTTGTTATCAAATCTTACAGTGAGGATGATGTGCACAAAAGTATAAAATACAATGTGTGGGCAA
GCACTCCTAATGGAAACAAGAAGCTGGATGCTGGATACCGTGAAGCGCAGGAGAAATCCAGTGA
ATGCCCAGTCTTCTTGTTCTTCTCTGTAAACACAAGTGGCCAGTTTGTTGGTGTTGCTGAAATG
GTTGGTCCTGTTGATTTTGAGAAGACAGTGGATTATTGGCAACAAGACAAGTGGAATGGGTGTT
TTCCAATCAAGTGGCATGTTGTCAAGGATGTACCCAACAACATCTTGAAGCACATTACATTGGA
TAACAACGACAATAAGCCTGTGACAAACAGCCGTGACACACAAGAG

Genomic sequence AGGCTACTGACATGATGCAGAAGCTGTCGTTGGAGAGCAAGAAGGAAGGCGCCACCCCTGACGC
TACCAAGAAGGTAGCTTTTGCTGGCGATTCTTGTCTGTGATGTGTTGCTTGTGCCATCCTTTTT
GTTTGTTTGGAGGAGAGGTAGCTAAAAATTATGGTCCTTTTTGTGAATTGCAGCCTGCCGGGAT
GCCCTATGGATCTGCAAGCGCCGGCGATGCGCAGAATGCGGCGTCGCCGGTGGACAGGTCGATC
ACTCCCCTGCTCCAGGAGGCCGTGAATGCCAACATCTTGTATCAGACCAATGGATATGGACCCT
CAGCATATTACTATCCTACTGGTACAAACACCTAGTACTTTGCTGGATAATCAGGTAGTCTAAT
TAAGTGCTGATTTTAATGTTTGTGCGTTCGTGTATATAGGTTATGACGGCTCAGCCAATGAATG
GGACTCCAGATATGCTGCCCATGATGGAACGGAGATGCCTCCTGTAAGTTAATGCAGTTATTTA
TAGTTAGTTCATCACTTTGCGATAGGTATTTTAAGGTGTAATGTGATATCACGAGTTCACCTGT
GCCTAGAGGAGGCTAAGGACCAAATATGGAGATAGAAACCGTGGGGGACATATGTTGTTAATTT
GGAATTTAATGAATTGCTTGTCTACTCATGCTATGTGTTGGAGATAAATTAACTCGATTCTGTT
ACAATGATCCAGCAGAGTGTTTATGGTGACATGTATGGATATGGCTATGCTCCCTATGGCCCAT
ATCCTTCTGGTTCTCCTGTCCCAACTGTTGGGCATGATGGCCAGTCATACGGCGCACAGCATTA
CCAGTACCCTGGTCAATATTATCAGCAACCAGCTCCAACCAATGCAAGCCATGGCGTCAATGCT
GTCAATTCTCAGTCTGAGATGCCCTCTGTTGCTGCTCACCAGGCACGTGTTCCGGTTGAATCAG
CAAAAGCTAGTGCCAATGGGACTGCTAATGGGATGGCAAATACTAACAGTAGTTCATTAGCACG
TAAGCAAACCCATCAAAATGTATCAGTATTAAACAATGGTTCATATGGAGGAGGGACTTTGCAA
GGTGGACCATCTGCTAACAATTATGGTCACAGTGGTCTTCATTCTCCAGTTCAGTGGTATGATG
GGCCAGTCTACTCTAATGGGCATCAGAGATCAAATACTAATTCCACATCTTATGGTTCTAACTC
GTATTCAGCAAAAAATCAGAGCCAGCGCCCAACTGCAAACCTCATGGTATGTTCTAGGACTGTC
CAATTCTCCATTGCCCCCCTCCTTCCCCCACTCTTCTTCTTTTTCCATAGCTTCTCAAAGCAGT
ATGATTGTCTCACAATTATTTTTTTTTCTGCTTATTAAATGCATTTACCTAGTATTAGATTCTG
CGATTACTGCCTTCCCCTTAAGTTGCACATAGCAAAAATGATAGTGATGCATTATGTGGCTCTC
ACAAAGTACAAGTATTAGCCTAAAATATCCATTTGTTTCAGGGTATGCATGCACAGATACCTTC
GTCGGGAATGGGTTTGACATCTCCTAGTTATCATACCAGGATGTACCCAGACAACAGATTATAT
GGGCAGTATGGTCAGTATGGGAACGCACTTAAAACTGGGCTTGGTTTCGGATCAAATATGTACA
ACTCCAGAAATAATGGACGGTGGGGAATTGTTGATAGCAAGTACAAGCCTAGAGGTCGTGCATC
TTTTGGTTTTGGCAGTGAGAACCAAGATGGCTTCACTGAGCTTAACAGAGGACCAAGATCTGGA
GGATTCAAGCACCAAAAACAGTTTGGACCTTCTGTCACTATTGCTGTGAAGGGCCAAGCCCTCC
CCTCAGTCGGGAAACAGGAGAATAGTGCCATTCCAGATAAGGGCCAATTCAACCAGGAAGGTTT
TCCAGTAACATACAAAGATGCAAAGTTCTTTGTTATCAAATCTTACAGTGAGGATGATGTGCAC
AAAAGTATAAAATACAATGTGTGGGCAAGCACTCCTAATGGAAACAAGAAGCTGGATGCTGGAT
ACCGTGAAGCGCAGGAGAAATCCAGTGAATGCCCAGTCTTCTTGTTCTTCTCTGTAAGTATTAT
TATTACCACATTATGTGATCCATTTGTCCCTCATATCACTCTTTATTGACATTGGGCATGGAAT
ATAGGTAAACACAAGTGGCCAGTTTGTTGGTGTTGCTGAAATGGTTGGTCCTGTTGATTTTGAG
AAGACAGTGGATTATTGGCAACAAGACAAGTGGAATGGGTGTTTTCCAATCAAGTGGCATGTTG
TCAAGGATGTACCCAACAACATCTTGAAGCACATTACATTGGATAACAACGACAATAAGCCTGT
GACAAACAGCCGTGACACACAAGAG
Conservation Information
Conserved circRNAs osi_circ_005104* osi_circ_013641
PMCS 0.40046895
Functional Information
Coding potential Y
Potential coding position 30778264-30778263(+)
30778266-30780591(-)
Potential amino acid sequence MMQKLSLESKKEGATPDATKKPAGMPYGSASAGDAQNAASPVDRSITPLLQEAVNANILYQTNG
YGPSAYYYPTGYDGSANEWDSRYAAHDGTEMPPSVYGDMYGYGYAPYGPYPSGSPVPTVGHDGQ
SYGAQHYQYPGQYYQQPAPTNASHGVNAVNSQSEMPSVAAHQARVPVESAKASANGTANGMANT
NSSSLARKQTHQNVSVLNNGSYGGGTLQGGPSANNYGHSGLHSPVQWYDGPVYSNGHQRSNTNS
TSYGSNSYSAKNQSQRPTANLMGMHAQIPSSGMGLTSPSYHTRMYPDNRLYGQYGQYGNALKTG
LGFGSNMYNSRNNGRWGIVDSKYKPRGRASFGFGSENQDGFTELNRGPRSGGFKHQKQFGPSVT
IAVKGQALPSVGKQENSAIPDKGQFNQEGFPVTYKDAKFFVIKSYSEDDVHKSIKYNVWASTPN
GNKKLDAGYREAQEKSSECPVFLFFSVNTSGQFVGVAEMVGPVDFEKTVDYWQQDKWNGCFPIK
WHVVKDVPNNILKHITLDNNDNKPVTNSRDTQERLLT*(+)
MSVASLVCHGCLSQAYCRCYPM*(-)
Sponge-miRNAs osa-miR5532
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Lu et al., 2015;Chu et al., 2017