Detail information of Os03g0748000_circ_g.5


General Information
CircRNA Name Os03g0748000_circ_g.5
ID in PlantcircBase osa_circ_021876
Alias NA
Organism Oryza sativa
Position chr3: 30779765-30781143  JBrowse»
Reference genome IRGSP-1.0.38
Type   ei-circRNA
Identification method CIRCexplorer
Parent gene Os03g0748000
Parent gene annotation YT521-B-like protein family protein. (Os03t0748000-01);Similar t
o YT521-B-like family protein, expressed. (Os03t0748000-02)
Parent gene strand +
Alternative splicing Os03g0748000_circ_g.2 Os03g0748000_circ_g.3 Os03g0748000_circ_g.4 Os03g0748000_circ_g.6 Os03g0748000_circ_g.7
Support reads 1
Tissues root
Exon boundary   Yes-No
Splicing signals   GC-AG
Number of exons covered Os03t0748000-01:3
Os03t0748000-02:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CATCAGCAAGACATCAATCTTGGATGATTTTGGTTTTTACGAGAACCGGCAAAAGCTGATGCAG
GAGAAGAGAGCTAAGCAGCAACTGCTTCAAGGACAGggtatgcatgcacagataccttcgtcgg
gaatgggtttgacatctcctagttatcataccaggatgtacccagacaacagattatatgggca
gtatggtc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTATGCATGCACAGATACCTTCGTCGGGAATGGGTTTGACATCTCCTAGTTATCATACCAGGA
TGTACCCAGACAACAGATTATATGGGCAGTATGGTCAGTATGGGAACGCACTTAAAACTGGGCT
TGGTTTCGGATCAAATATGTACAACTCCAGAAATAATGGACGGTGGGGAATTGTTGATAGCAAG
TACAAGCCTAGAGGTCGTGCATCTTTTGGTTTTGGCAGTGAGAACCAAGATGGCTTCACTGAGC
TTAACAGAGGACCAAGATCTGGAGGATTCAAGCACCAAAAACAGTTTGGACCTTCTGTCACTAT
TGCTGTGAAGGGCCAAGCCCTCCCCTCAGTCGGGAAACAGGAGAATAGTGCCATTCCAGATAAG
GGCCAATTCAACCAGGAAGGTTTTCCAGTAACATACAAAGATGCAAAGTTCTTTGTTATCAAAT
CTTACAGTGAGGATGATGTGCACAAAAGTATAAAATACAATGTGTGGGCAAGCACTCCTAATGG
AAACAAGAAGCTGGATGCTGGATACCGTGAAGCGCAGGAGAAATCCAGTGAATGCCCAGTCTTC
TTGTTCTTCTCTGTAAGTATTATTATTACCACATTATGTGATCCATTTGTCCCTCATATCACTC
TTTATTGACATTGGGCATGGAATATAGGTAAACACAAGTGGCCAGTTTGTTGGTGTTGCTGAAA
TGGTTGGTCCTGTTGATTTTGAGAAGACAGTGGATTATTGGCAACAAGACAAGTGGAATGGGTG
TTTTCCAATCAAGTGGCATGTTGTCAAGGATGTACCCAACAACATCTTGAAGCACATTACATTG
GATAACAACGACAATAAGCCTGTGACAAACAGCCGTGACACACAAGAGGTATCCTTTCTCAATA
ACTTGCCAAGTTCTGTTGATTGTACAATGGTCAATTGCAGGCCACGGGCCATTAAGGGTACTAT
TAATGTCTCTGTTATTTTAGATAGTTAATTTCATCGTCATTTTCTTGAGATAATTCAAATTTCT
TGCTGTGGAACCAGATTAGTCGTTCAGTAAATGAGAACTTAAGACATGATATATATCAATTTCT
TCATCATGCTTATGGTCATGAGTGGACCTTCATGTATAAGAAGCTGATGAATTTTATTTTTATC
TATTGATATGGCATGACAATGTGATGATCCTTTCAGTATGCTCCATGTGCGTTACTTACCAAGT
AGATGTAATGCTTCAGGTTAAGCTTGAGCAAGGTCTTGAAATGCTCAAGATTTTCAAGGACCAC
ATCAGCAAGACATCAATCTTGGATGATTTTGGTTTTTACGAGAACCGGCAAAAGCTGATGCAGG
AGAAGAGAGCTAAGCAGCAACTGCTTCAAGGACAG
Conservation Information
Conserved circRNAs NA
PMCS 0.273139129
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs osa-miR5532
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017