Detail information of Os03g0748000_circ_g.7


General Information
CircRNA Name Os03g0748000_circ_g.7
ID in PlantcircBase osa_circ_021878
Alias NA
Organism Oryza sativa
Position chr3: 30780645-30780816  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os03g0748000
Parent gene annotation YT521-B-like protein family protein. (Os03t0748000-01);Similar t
o YT521-B-like family protein, expressed. (Os03t0748000-02)
Parent gene strand +
Alternative splicing Os03g0748000_circ_g.2 Os03g0748000_circ_g.3 Os03g0748000_circ_g.4 Os03g0748000_circ_g.5 Os03g0748000_circ_g.6
Support reads 1
Tissues shoot
Exon boundary   No-No
Splicing signals   AA-AG
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTCTGTTATTTTAGATAGTTAATTTCATCGTCATTTTCTTGAGATAATTCAAATTTCTTGCTGT
GGAACCAGATTAGTCGTTCAGTgtatcctttctcaataacttgccaagttctgttgattgtaca
atggtcaattgcaggccacgggccattaagggtactattaatgt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTATCCTTTCTCAATAACTTGCCAAGTTCTGTTGATTGTACAATGGTCAATTGCAGGCCACGGG
CCATTAAGGGTACTATTAATGTCTCTGTTATTTTAGATAGTTAATTTCATCGTCATTTTCTTGA
GATAATTCAAATTTCTTGCTGTGGAACCAGATTAGTCGTTCAGT
Conservation Information
Conserved circRNAs NA
PMCS 0.146317442
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017