Detail information of BGIOSGA014534_circ_igg.4


General Information
CircRNA Name BGIOSGA014534_circ_igg.4
ID in PlantcircBase osi_circ_014674
Alias Chr04:29026568_29027356(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 27267107-27267895  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA014534_circ_g.5 BGIOSGA014534_circ_igg.1 BGIOSGA014534_circ_g.2 BGIOSGA014534_circ_g.3 BGIOSGA014534_circ_g.5 BGIOSGA014534_circ_g.6 BGIOSGA014534_circ_g.7
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-TA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCTCGCTGTGAAGAACCATGGCCAGGAGCTCCTGGAGCCTCTCCAGAACTCTCACCGGTGTTGC
CAGACCCAGTTCTTTTCTTCTTCACCATGATGGGCAcgtcgtattggtgaaggtctttatcagg
aagttcagcaaagaaatggttcgccttcacaatgcacctgtccccatatgtacccttgccaggg
cgcaacgg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CGTCGTATTGGTGAAGGTCTTTATCAGGAAGTTCAGCAAAGAAATGGTTCGCCTTCACAATGCA
CCTGTCCCCATATGTACCCTTGCCAGGGCGCAACGGGAATCTAACTGATTTGCTTGACGGTGGT
GCTATTTGAATGGCTTGGCTGGTCGAACTTTGATCACGGGTGGCAAGTTGCTGAAACTGTTGTT
GGACTTGTCCACTGCTCACCTCCGCCGCAGGCTGAGAGGATGAGCCAGCTCCCGATGGGGTTGG
TGAAACCATCGGGGCTTGGTATTGGACATGTGGGGCTTGGTGCAGCTCGGGAACTGTTCTTGAT
GAACCTGAAGGAACACTACGTCCGCCACTCCCCCTAGGTCCGCCATAGTATGGCTGTGGCATTC
CACCTCTGGGGCGTGGACCACCACGTCCTTGATAGTCACGCGGTTGATACTCGGGAGGCCCACC
ACCTGGGTGATGTGAACCTGATCCTCCACGGCCCTGATAGTCAGGAGGCCCACCACCTGGATGA
TGTGAACCTGGCCCTCCACGACCCTGATACTCAGGAGGCCCTCCGCCTGGATGGTGTGAACCTT
GCCCTCCACGGCCCTGATAATGTCCACCACGGCCCTGATATTGCCCACCACCACGGCCACCCTG
TTGAGGCACCCAACCACGTCCTCCCCCATGCTGTTGAGGACCTCTCTCAGCTCGCTGTGAAGAA
CCATGGCCAGGAGCTCCTGGAGCCTCTCCAGAACTCTCACCGGTGTTGCCAGACCCAGTTCTTT
TCTTCTTCACCATGATGGGCA
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021