Detail information of AT2G02960_circ_g.4


General Information
CircRNA Name AT2G02960_circ_g.4
ID in PlantcircBase ath_circ_012625
Alias Ath_circ_FC1145
Organism Arabidpsis thaliana
Position chr2: 863320-863604  JBrowse»
Reference genome TAIR10.38
Type   ei-circRNA
Identification method find_circ
Parent gene AT2G02960
Parent gene annotation RING/FYVE/PHD zinc finger superfamily protein
Parent gene strand -
Alternative splicing AT2G02960_circ_g.1 AT2G02960_circ_g.2 AT2G02960_circ_g.3
Support reads 57
Tissues whole_plant
Exon boundary   No-No
Splicing signals   GT-CA
Number of exons covered AT2G02960.1:1
AT2G02960.4:1
AT2G02960.6:1
AT2G02960.2:1
AT2G02960.5:1
AT2G02960.3:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CATCATGTGTGATCTATCATCGAATATATGCATAGTCATATTGCCACATCGATTCAAGTCTATA
ATCCTAAAGATTACAACAAAAAAGGTAACATACCTGgatattgataaacccaatcagagtcaca
tagagaattctactaagttggtgatacagatgcatgaacgttgctcagcattcagatatactta
atgtgagc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GATATTGATAAACCCAATCAGAGTCACATAGAGAATTCTACTAAGTTGGTGATACAGATGCATG
AACGTTGCTCAGCATTCAGATATACTTAATGTGAGCATCATTTATCCATATTCATACCAAATCA
TGACTTGAAAGTGACAATTGGTGTATTAAAAGGTGGAATGCACGATCTTAAATCATTCATCATG
TGTGATCTATCATCGAATATATGCATAGTCATATTGCCACATCGATTCAAGTCTATAATCCTAA
AGATTACAACAAAAAAGGTAACATACCTG
Conservation Information
Conserved circRNAs NA
PMCS 0.178618944
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017a