Detail information of AT2G02960_circ_g.1


General Information
CircRNA Name AT2G02960_circ_g.1
ID in PlantcircBase ath_circ_012622
Alias 2:862308-863995
Organism Arabidpsis thaliana
Position chr2: 862308-863995  JBrowse»
Reference genome TAIR10.38
Type   u-circRNA
Identification method find_circ; CIRI2
Parent gene AT2G02960
Parent gene annotation RING/FYVE/PHD zinc finger superfamily protein
Parent gene strand -
Alternative splicing AT2G02960_circ_g.2 AT2G02960_circ_g.3 AT2G02960_circ_g.4
Support reads 1/1
Tissues root;flower
Exon boundary   No-Yes
Splicing signals   CT-AC
Number of exons covered AT2G02960.3:7
AT2G02960.6:7
AT2G02960.2:7
AT2G02960.5:6
AT2G02960.1:7
AT2G02960.4:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CATCATCAGAAATATCTAACGCCTTATCATTAACCACCGGCGACTCTGATCTCATCTCCTCAAC
CTCCGCATTAACCGGAGACATATGACTGCCATATGActtgtaatggctccatgcttgtgacatt
agatcagaattcagacaggatcgtcatgctgttgttgtgtagatgtagtcgcatgagccacggc
ggatgatg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTGTAATGGCTCCATGCTTGTGACATTAGATCAGAATTCAGACAGGATCGTCATGCTGTTGTT
GTGTAGATGTAGTCGCATGAGCCACGGCGGATGATGATATTCCCGGTGATACCGTGAAGTGAAC
TGTTCTAGGCTGCCCTGACTGAAGCACCAACGCAAACTGTGTAGCCAAAGCTGCAGCTTCCTGT
TCAATCGGGTTACATTAAGTCGATACCAGTGACTCAGTTTGATTCATAAAACAGTAAGAAAAAA
AAAAGACTGTCCGGAAAAATCCTTGCATGAGTTCTTATACTACTAACCTGTCTCTGTCTTCGGC
GCTGTAGAATACTGATGGCCCAAGCCATGATATAGCATGGAAGAAGAAATCCAGCAGCTCGGAG
CAGGACAAGCTAAAATAAGAATCAGACAATTTTGTGGTTTGGTGTTACAACTTAAATGCAACTG
AGACAAAAAATAAAAGAAAAAGAAAAAAGGAAGAAGCTTCAATGAGCTTACAGATAGTATCGAA
GATGGGTCGTCTTCTTCGCCATCAGTATCATCTGTTATGGTCAGTGCGTGTCGTAAGAGAAGAA
GAGCCATTAACTGTGAAAAAGAAAAGTGTGTTTTGCGGTTATCACAAGCGAGGGATTGTGTTGA
GACTTAAAATAGAAATCTGTCAAGAAGCTTTAAGGCTTACTATTAGAGCAGCTGAGCGACAGAA
TGCGGCCCCGCTTGCACTTGAAGCTGTATATTCCACATATTCAGACTCTAAATACCGACGTTCA
GCTTCAGCAATTGCAAGGAGACGAGGATCATGCACATCCAAACCTGAGATTGTCCATCCTCCAC
TGCAACGCACATGCCAAAGTCAGAAACATAATAATAACCAACCTCAGATAAAATTCTGAGCAGC
AGAAACATGAAATTAACCATACCCAATGTCAATAGTTGTTTCTTCAGGCTGAAGTGGAGGTGGT
GGAGCGGTATATCCAGGTTGATAAGGCTAGCAAGAGAAGTTAAAGACCATCAGATATTGATAAA
CCCAATCAGAGTCACATAGAGAATTCTACTAAGTTGGTGATACAGATGCATGAACGTTGCTCAG
CATTCAGATATACTTAATGTGAGCATCATTTATCCATATTCATACCAAATCATGACTTGAAAGT
GACAATTGGTGTATTAAAAGGTGGAATGCACGATCTTAAATCATTCATCATGTGTGATCTATCA
TCGAATATATGCATAGTCATATTGCCACATCGATTCAAGTCTATAATCCTAAAGATTACAACAA
AAAAGGTAACATACCTGGTGACAAATCTCGCATATAATGTTTCCCTTTTCATTGCACCAACGCT
GAACACATTTTCTATGAGCATACTGGTCAAAAACATAACAAAAAATTCGTCAACAGTCAATTAT
TCTAGAACAAAGCCATTGCTCAATATAGACCAAATGGTTTAAGAATTAGATGATGATGAAAACT
AACCTTTAGGCTGCCACTGCAAGCACAAGGGCTCTCAAGATTCTCAACAGGAGACTCATCAGAA
CAAATACGACATTCACCAGAAACAATAAGCGGTTCATTCTCATCATCATGATCATCATCAGAAA
TATCTAACGCCTTATCATTAACCACCGGCGACTCTGATCTCATCTCCTCAACCTCCGCATTAAC
CGGAGACATATGACTGCCATATGA
Conservation Information
Conserved circRNAs NA
PMCS 0.265517092
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs ath-miR5658
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020