Detail information of AT2G02960_circ_g.2


General Information
CircRNA Name AT2G02960_circ_g.2
ID in PlantcircBase ath_circ_012623
Alias 2:862611-862893
Organism Arabidpsis thaliana
Position chr2: 862611-862893  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT2G02960
Parent gene annotation RING/FYVE/PHD zinc finger superfamily protein
Parent gene strand -
Alternative splicing AT2G02960_circ_g.1 AT2G02960_circ_g.3 AT2G02960_circ_g.4
Support reads 2
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT2G02960.4:2
AT2G02960.6:2
AT2G02960.1:2
AT2G02960.5:1
AT2G02960.3:2
AT2G02960.2:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCAATGAGCTTACAGATAGTATCGAAGATGGGTCGTCTTCTTCGCCATCAGTATCATCTGTTAT
GGTCAGTGCGTGTCGTAAGAGAAGAAGAGCCATTAActgtctctgtcttcggcgctgtagaata
ctgatggcccaagccatgatatagcatggaagaagaaatccagcagctcggagcaggacaagct
aaaataag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGTCTCTGTCTTCGGCGCTGTAGAATACTGATGGCCCAAGCCATGATATAGCATGGAAGAAGA
AATCCAGCAGCTCGGAGCAGGACAAGCTAAAATAAGAATCAGACAATTTTGTGGTTTGGTGTTA
CAACTTAAATGCAACTGAGACAAAAAATAAAAGAAAAAGAAAAAAGGAAGAAGCTTCAATGAGC
TTACAGATAGTATCGAAGATGGGTCGTCTTCTTCGCCATCAGTATCATCTGTTATGGTCAGTGC
GTGTCGTAAGAGAAGAAGAGCCATTAA
Conservation Information
Conserved circRNAs NA
PMCS 0.316229422
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020