Detail information of AT2G02960_circ_g.3


General Information
CircRNA Name AT2G02960_circ_g.3
ID in PlantcircBase ath_circ_012624
Alias NA
Organism Arabidpsis thaliana
Position chr2: 863318-863601  JBrowse»
Reference genome TAIR10.38
Type   i-circRNA
Identification method CIRCexplorer, circseq_cup
Parent gene AT2G02960
Parent gene annotation RING/FYVE/PHD zinc finger superfamily protein
Parent gene strand -
Alternative splicing AT2G02960_circ_g.1 AT2G02960_circ_g.2 AT2G02960_circ_g.4
Support reads 5
Tissues seedlings
Exon boundary   No-No
Splicing signals   CT-AT
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATTCATCATGTGTGATCTATCATCGAATATATGCATAGTCATATTGCCACATCGATTCAAGTCT
ATAATCCTAAAGATTACAACAAAAAAGGTAACATACcagatattgataaacccaatcagagtca
catagagaattctactaagttggtgatacagatgcatgaacgttgctcagcattcagatatact
taatgtga
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 284
Transcript exons: 863318-863601
CAGATATTGATAAACCCAATCAGAGTCACATAGAGAATTCTACTAAGTTGGTGATACAGATGCA
TGAACGTTGCTCAGCATTCAGATATACTTAATGTGAGCATCATTTATCCATATTCATACCAAAT
CATGACTTGAAAGTGACAATTGGTGTATTAAAAGGTGGAATGCACGATCTTAAATCATTCATCA
TGTGTGATCTATCATCGAATATATGCATAGTCATATTGCCACATCGATTCAAGTCTATAATCCT
AAAGATTACAACAAAAAAGGTAACATAC

Genomic sequence CAGATATTGATAAACCCAATCAGAGTCACATAGAGAATTCTACTAAGTTGGTGATACAGATGCA
TGAACGTTGCTCAGCATTCAGATATACTTAATGTGAGCATCATTTATCCATATTCATACCAAAT
CATGACTTGAAAGTGACAATTGGTGTATTAAAAGGTGGAATGCACGATCTTAAATCATTCATCA
TGTGTGATCTATCATCGAATATATGCATAGTCATATTGCCACATCGATTCAAGTCTATAATCCT
AAAGATTACAACAAAAAAGGTAACATAC
Conservation Information
Conserved circRNAs NA
PMCS 0.531212735
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Pan et al., 2017