logo





circRNA ID
AT1G01650_circ_g.2
Alias
ath_circ_000091
Organism
Arabidpsis thaliana
Position
chr1: 234250-237023  JBrowse»
Reference genome
TAIR10.38
Type  
ue-circRNA
Identification method
CIRCexplorer, PcircRNA_finder
Parent gene
Parent gene annotation
Signal peptide peptidase-like 4
Parent gene strand
-
Splice junction sequence  
TAGCATGTTTCTCCTTAGATTCCAAGGTTGGGCCAAACCTAGCACCAACACCAACATACTCCGT
GTACTCCGACCCATTGACTCGAGTTGGGACTTTCACctcagtgcgaaagttacaagcagtcctg
gtaagataatgtcaccaaatccaattatgctgtagccaccccaaggatcaaacattcgtgggat
ctttagta
Support reads
2
Tissues
whole_plant
Exon boundary  
Yes-Yes
Splicing signals  
CT-AC
Sanger sequencing for BSS  
NA
PCR primers for BSS  
NA
Assembled circRNA sequence  
NA
Sanger sequencing for FL  
NA
PCR primers for FL  
NA
Genomic sequence
CTCAGTGCGAAAGTTACAAGCAGTCCTGGTAAGATAATGTCACCAAATCCAATTATGCTGTAGC
CACCCCAAGGATCAAACATTCGTGGGATCTTTAGTAGCATTGGAATTCCGTCCTCTCCGCTTCT
GTCACCACGGGCTACCTATATGTGGGAAAATGGGAAAAGACGTACAATTCTCCGATAATATCAG
TGTGGAGCAGACAGATAAGTATGTGTAGTTGGAATATCTAACAAAGTCTTCTTGCATGATGGTC
TGGAGCAAAAAAGAAAAACTTACCACAATCATCACGCTTTCACGGAACCACCATTTTGAAACAA
AAACCCAGAAGATGTCATACATGAAGGCACAGCTGAGAAGAACAAACCCGACCTGTTTACGTAA
GAGTTCAATGAGTCATCATAACTAATATTGTTATTATAGAGATTGGTCTTCTATACATTGGCAG
AAATGATTGTATCCGTCTACCAGCAGCAATCAAATTTTCAGTCTTCAACTGATTGGTTTAGACA
GTTGAATTTTCAACATGTTAGAGCACAAATTCAGAATATATACACAGGAAAAGTGATGGTTCAA
AACAAAGCTGGTACGAGATGGCTAAAGGTGTTTGTCAACATGTGATATTTAGTGCCCTCATGAT
TGTAACGGCAATCCCATGTGACATTTGATAAGGAATTGGTAATACCTTAAGATTTGGTACGCGG
ACAATTTGAAGAACCGTGATTATCAGTGAGATTCCCTGTCAGCAAGAAAAACCAAAAGTAAGCT
GTTAACTTGTGTTATTTGTTAAGACTACAGATAGGTCAACCTAACACCAATTACTTATACATAT
GCATGAAGGTATGTACATGGTAGCCTTGTATGGAAATTTAACAGTAGGTATACTTGTAGAAAGA
CATGGATTCAAGAAAGGTCAGTTAAGAGAGAGAGATGGAAACCCGCGCTTACAAGTATATCTTG
CCCTATCCAAGCATAAGAGTATTGACGTTTAACCGCCCAAAATACAGCAAATGCTATGCAAAAG
GGACAAATAGCCAGAGTCAAGTATGAGACAGCACCCAGGAAAGGAACTTTGACATATGATTCTC
CAAAGCGGCGGAACCATCTGAAACTATAACAAATTTAACGTCAGTATCAGATTTTCTTTTTTAC
TTCTCAAAGAGTGAAGAAGCTTGAATACCCTAGCATTTCATAGTCAACAAAAAGAAACAACTCA
TGGTTTCTATCTGATTCATTATTTCATGGTAAAACAAGACCTGAAATCAAGACAATGCAGAACG
TAGAAAGTTTGAAAAGAGATCAATGCACGAGAATAAATAATGAAAAAATCTTGGGATCACGAGT
GTTTCTTCTAGTATTAAAGGGCTGTTTCCATCTTAATGTTCCTCTCTACTGCTCTTTGAAAAGC
AAAAAGAGGTGAAACAAGCTCCTTACAAGAAAATGTTAATGAGAGAAGAACTATACATACCATG
AGAGTAGAGAGACCAAACAAGTTTGCAGCCCCTGATAGCACCAACAAAACTTTCAACATCAGTA
CAGGATGGTTCAATAAGGTATTGCTATGATTTCAATTGGTCACAAGATAAACGTTCTACCTCTA
CGCCACCTATGCAAAAGAGTACCACCAACACCTCTATAAACCAGAATGACATAAGCTTGTAGAG
CATGATCAGGAAACAAGAAGCCACCACTACAAACAAAATTGCTGATATCACGGTGACCTCAACA
ACACCTCTAGAGCTGGTGGTTGATAACTGCAAAAGTTCATCTGATCCGTCCTGCAGTTTAAGAT
AGATAACAAACGAATGAGGGCACTTTTCCTTGGCTGTCAAAAGGTTCGAACATGGTGGATGTCC
AGAATATAAAATTGTACGAAATTTTGAGCCAGCAATCACCTTTAGCAGCTTGTCTTGCTCAATA
GCTTCTTCCCTGACGGTCCACGCAGACCAATAAGAAGCACATAAAATGGTACCGACAGCCATAA
GCCAAAGAAAGACCTCAGCCACATCAACTGCTGGACGTTTCGGCGAGTAGAGCTGCAGAGTAAC
TGAACAAATATAGTCAACACCAACTCAAAGAAAAAGAGAGAGCACAGAGATGCCAAACTATGAT
AAGATATGCTAAAATACAAGAAGAGCAATCTATGCGGAAGTACAGTTTGATTTATACGAAGAAT
TACCTATAGCGTTACTTTTGACTATGTTCTCCAGACTTCTACCAGCATCAACAGGTAGCATAAC
AACAGGAATAGTAATATCTAAAACGTTTTCACCCTTCTCGCAGACCATCTTGAAAAGATCTGCA
AAGCAACATTCAACCTTGCAAAACTCAAGAGGGATTTAACTAGAATTGGGAAATAAATAATCAC
TTGGAACTAGTACAAGAGGAGGAATATATACAGAAAAAAGCCTTTAGTGAATTACCTGTACTGT
TGTTTATGATAAGGATGGCAGAGGCACCAGCTGCTTCAGCAACCTTAGTTTTGGTGGTAAAACT
GCATTTACCACGATGAACAAGAATGACCTCTCCTGTAAGCTACCAAAAGATAATGAAACTGGAA
TTACACAAGAAGGAAAGATGAGTACAAGAGAGACAAGCCAAAAAGGAAACTTTACCTTATTTTT
GGGAGTGCTGCAACAATCAGGAGGGTCAGCAATAGCAAGTTTGATGAGGGTAGCATGTTTCTCC
TTAGATTCCAAGGTTGGGCCAAACCTAGCACCAACACCAACATACTCCGTGTACTCCGACCCAT
TGACTCGAGTTGGGACTTTCAC
Number of exons covered
AT1G01650.2:9
AT1G01650.1:10
AT1G01650.4:9
AT1G01650.3:9
Conserved circRNAs
NA
Coding potential
N
Potential coding position
NA
Potential amino acid sequence
NA
Sponge-miRNAs
NA
circRNA-miRNA-mRNA network
References
Chu et al., 2017

Copyright©2017-2021 Institute of Crop Sciences / Institute of Bioinformatics, Zhejiang University.
Any questions or suggestions, please contact the Fan's lab, bioinplant@zju.edu.cn
For submittion, please click here. Last modified at 2021-03-09.

Supported by   nsfc    zju