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circRNA ID
AT1G01650_circ_g.11
Alias
ath_circ_000100, At_ciR977
Organism
Arabidpsis thaliana
Position
chr1: 236673-237023  JBrowse»
Reference genome
TAIR10.38
Type  
u-circRNA
Identification method
CIRCexplorer, find_circ
Parent gene
Parent gene annotation
Signal peptide peptidase-like 4
Parent gene strand
-
Splice junction sequence  
TAGCATGTTTCTCCTTAGATTCCAAGGTTGGGCCAAACCTAGCACCAACACCAACATACTCCGT
GTACTCCGACCCATTGACTCGAGTTGGGACTTTCACctgtactgttgtttatgataaggatggc
agaggcaccagctgcttcagcaaccttagttttggtggtaaaactgcatttaccacgatgaaca
agaatgac
Support reads
6/1
Tissues
leaf/root
Exon boundary  
Yes-Yes
Splicing signals  
CT-AC
Sanger sequencing for BSS  
NA
PCR primers for BSS  
NA
Assembled circRNA sequence  
NA
Sanger sequencing for FL  
NA
PCR primers for FL  
NA
Genomic sequence
CTGTACTGTTGTTTATGATAAGGATGGCAGAGGCACCAGCTGCTTCAGCAACCTTAGTTTTGGT
GGTAAAACTGCATTTACCACGATGAACAAGAATGACCTCTCCTGTAAGCTACCAAAAGATAATG
AAACTGGAATTACACAAGAAGGAAAGATGAGTACAAGAGAGACAAGCCAAAAAGGAAACTTTAC
CTTATTTTTGGGAGTGCTGCAACAATCAGGAGGGTCAGCAATAGCAAGTTTGATGAGGGTAGCA
TGTTTCTCCTTAGATTCCAAGGTTGGGCCAAACCTAGCACCAACACCAACATACTCCGTGTACT
CCGACCCATTGACTCGAGTTGGGACTTTCAC
Number of exons covered
AT1G01650.3:1
AT1G01650.4:1
AT1G01650.1:2
AT1G01650.2:1
Conserved circRNAs
NA
Coding potential
N
Potential coding position
NA
Potential amino acid sequence
NA
Sponge-miRNAs
NA
circRNA-miRNA-mRNA network
References
Ye et al., 2015;Chu et al., 2017

Copyright©2017-2021 Institute of Crop Sciences / Institute of Bioinformatics, Zhejiang University.
Any questions or suggestions, please contact the Fan's lab, bioinplant@zju.edu.cn
For submittion, please click here. Last modified at 2021-03-09.

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