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circRNA ID
AT1G01650_circ_g.7
Alias
ath_circ_000096
Organism
Arabidpsis thaliana
Position
chr1: 234935-237023  JBrowse»
Reference genome
TAIR10.38
Type  
ue-circRNA
Identification method
PcircRNA_finder
Parent gene
Parent gene annotation
Signal peptide peptidase-like 4
Parent gene strand
-
Splice junction sequence  
TAGCATGTTTCTCCTTAGATTCCAAGGTTGGGCCAAACCTAGCACCAACACCAACATACTCCGT
GTACTCCGACCCATTGACTCGAGTTGGGACTTTCACcttaagatttggtacgcggacaatttga
agaaccgtgattatcagtgagattccctgtcagcaagaaaaaccaaaagtaagctgttaacttg
tgttattt
Support reads
3
Tissues
whole_plant
Exon boundary  
Yes-Yes
Splicing signals  
CT-AC
Sanger sequencing for BSS  
NA
PCR primers for BSS  
NA
Assembled circRNA sequence  
NA
Sanger sequencing for FL  
NA
PCR primers for FL  
NA
Genomic sequence
CTTAAGATTTGGTACGCGGACAATTTGAAGAACCGTGATTATCAGTGAGATTCCCTGTCAGCAA
GAAAAACCAAAAGTAAGCTGTTAACTTGTGTTATTTGTTAAGACTACAGATAGGTCAACCTAAC
ACCAATTACTTATACATATGCATGAAGGTATGTACATGGTAGCCTTGTATGGAAATTTAACAGT
AGGTATACTTGTAGAAAGACATGGATTCAAGAAAGGTCAGTTAAGAGAGAGAGATGGAAACCCG
CGCTTACAAGTATATCTTGCCCTATCCAAGCATAAGAGTATTGACGTTTAACCGCCCAAAATAC
AGCAAATGCTATGCAAAAGGGACAAATAGCCAGAGTCAAGTATGAGACAGCACCCAGGAAAGGA
ACTTTGACATATGATTCTCCAAAGCGGCGGAACCATCTGAAACTATAACAAATTTAACGTCAGT
ATCAGATTTTCTTTTTTACTTCTCAAAGAGTGAAGAAGCTTGAATACCCTAGCATTTCATAGTC
AACAAAAAGAAACAACTCATGGTTTCTATCTGATTCATTATTTCATGGTAAAACAAGACCTGAA
ATCAAGACAATGCAGAACGTAGAAAGTTTGAAAAGAGATCAATGCACGAGAATAAATAATGAAA
AAATCTTGGGATCACGAGTGTTTCTTCTAGTATTAAAGGGCTGTTTCCATCTTAATGTTCCTCT
CTACTGCTCTTTGAAAAGCAAAAAGAGGTGAAACAAGCTCCTTACAAGAAAATGTTAATGAGAG
AAGAACTATACATACCATGAGAGTAGAGAGACCAAACAAGTTTGCAGCCCCTGATAGCACCAAC
AAAACTTTCAACATCAGTACAGGATGGTTCAATAAGGTATTGCTATGATTTCAATTGGTCACAA
GATAAACGTTCTACCTCTACGCCACCTATGCAAAAGAGTACCACCAACACCTCTATAAACCAGA
ATGACATAAGCTTGTAGAGCATGATCAGGAAACAAGAAGCCACCACTACAAACAAAATTGCTGA
TATCACGGTGACCTCAACAACACCTCTAGAGCTGGTGGTTGATAACTGCAAAAGTTCATCTGAT
CCGTCCTGCAGTTTAAGATAGATAACAAACGAATGAGGGCACTTTTCCTTGGCTGTCAAAAGGT
TCGAACATGGTGGATGTCCAGAATATAAAATTGTACGAAATTTTGAGCCAGCAATCACCTTTAG
CAGCTTGTCTTGCTCAATAGCTTCTTCCCTGACGGTCCACGCAGACCAATAAGAAGCACATAAA
ATGGTACCGACAGCCATAAGCCAAAGAAAGACCTCAGCCACATCAACTGCTGGACGTTTCGGCG
AGTAGAGCTGCAGAGTAACTGAACAAATATAGTCAACACCAACTCAAAGAAAAAGAGAGAGCAC
AGAGATGCCAAACTATGATAAGATATGCTAAAATACAAGAAGAGCAATCTATGCGGAAGTACAG
TTTGATTTATACGAAGAATTACCTATAGCGTTACTTTTGACTATGTTCTCCAGACTTCTACCAG
CATCAACAGGTAGCATAACAACAGGAATAGTAATATCTAAAACGTTTTCACCCTTCTCGCAGAC
CATCTTGAAAAGATCTGCAAAGCAACATTCAACCTTGCAAAACTCAAGAGGGATTTAACTAGAA
TTGGGAAATAAATAATCACTTGGAACTAGTACAAGAGGAGGAATATATACAGAAAAAAGCCTTT
AGTGAATTACCTGTACTGTTGTTTATGATAAGGATGGCAGAGGCACCAGCTGCTTCAGCAACCT
TAGTTTTGGTGGTAAAACTGCATTTACCACGATGAACAAGAATGACCTCTCCTGTAAGCTACCA
AAAGATAATGAAACTGGAATTACACAAGAAGGAAAGATGAGTACAAGAGAGACAAGCCAAAAAG
GAAACTTTACCTTATTTTTGGGAGTGCTGCAACAATCAGGAGGGTCAGCAATAGCAAGTTTGAT
GAGGGTAGCATGTTTCTCCTTAGATTCCAAGGTTGGGCCAAACCTAGCACCAACACCAACATAC
TCCGTGTACTCCGACCCATTGACTCGAGTTGGGACTTTCAC
Number of exons covered
AT1G01650.1:8
AT1G01650.2:7
AT1G01650.4:7
AT1G01650.3:7
Conserved circRNAs
NA
Coding potential
Y
Potential coding position
236538-234937(-)
Potential amino acid sequence
MVCEKGENVLDITIPVVMLPVDAGRSLENIVKSNAIVTLQLYSPKRPAVDVAEVFLWLMAVGTI
LCASYWSAWTVREEAIEQDKLLKDGSDELLQLSTTSSRGVVEVTVISAILFVVVASCFLIMLYK
LMSFWFIEVLVVLFCIGGVEGLQTCLVSLLSCFRWFRRFGESYVKVPFLGAVSYLTLAICPFCI
AFAVFWAVKRQYSYAWIGQDILGISLIITVLQIVRVPNLKVKVPTRVNGSEYTEYVGVGARFGP
TLESKEKHATLIKLAIADPPDCCSTPKNKLTGEVILVHRGKCSFTTKTKVAEAAGASAILIINN
STDLFKMVCEKGENVLDITIPVVMLPVDAGRSLENIVKSNAIVTLQLYSPKRPAVDVAEVFLWL
MAVGTILCASYWSAWTVREEAIEQDKLLKDGSDELLQLSTTSSRGVVEVTVISAILFVVVASCF
LIMLYKLMSFWFIEVLVVLFCIGGVEGLQTCLVSLLSCFRWFRRFGESYVKVPFLGAVSYLTLA
ICPFCIAFAVFWAVKRQYSYAWIGQDILGISLIITVLQIVRVPNLKVKVPTRVNGSEYTEYVGV
GARFGPTLESKEKHATLIKLAIADPPDCCSTPKNKLTGEVILVHRGKCSFTTKTKVAEAAGASA
ILIINNSTDLFKMVCEKGENVLDITIPVVMLPVDAGRSLENIVKSNAIVTLQLYSPKRPAVDVA
EVFLWLMAVGTILCASYWSAWTVREEAIEQDKLLKDGSDELLQLSTTSSRGVVEVTVISAILFV
VVASCFLIMLYKLMSFWFIEVLVVLFCIGGVEGLQTCLVSLLSCFRWFRRFGESYVKVPFLGAV
SYLTLAICPFCIAFAVFWAVKRQYSYAWIGQDILGISLIITVLQIVRVPNLKVKVPTRVNGSEY
TEYVGVGARFGPTLESKEKHATLIKLAIADPPDCCSTPKNKLTGEVILVHRGKCSFTTKTKVAE
AAGASAILIINNSTDLFKMVCEKGENVLDITIPVVMLPVDAGRSLENIVKSNAIVTLQLYSPKR
PAVDVAEVFLWLMAVGTILCASYWSAWTVREEAIEQDKLLKDGSDELLQLSTTSSRGVVEVTVI
SAILFVVVASCFLIMLYKLMSFWFIEVLVVLFCIGGVEGLQTCLVSLLSCFRWFRRFGESYVKV
PFLGAVSYLTLAICPFCIAFAVFWAVKRQYSYAWIGQDILGISLIITVLQIVRVPNLK(-)
Sponge-miRNAs
NA
circRNA-miRNA-mRNA network
References
Chu et al., 2017

Copyright©2017-2021 Institute of Crop Sciences / Institute of Bioinformatics, Zhejiang University.
Any questions or suggestions, please contact the Fan's lab, bioinplant@zju.edu.cn
For submittion, please click here. Last modified at 2021-03-09.

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