Detail information of Os04g0442000_circ_g.5


General Information
CircRNA Name Os04g0442000_circ_g.5
ID in PlantcircBase osa_circ_023936
Alias NA
Organism Oryza sativa
Position chr4: 22008223-22008942  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os04g0442000
Parent gene annotation Similar to Auxin response factor 2 (ARF1-binding protein) (ARF1-
BP). (Os04t0442000-01)
Parent gene strand +
Alternative splicing Os04g0442000_circ_g.4 Os04g0442000_circ_g.6 Os04g0442000_circ_g.7 Os04g0442000_circ_g.8 Os04g0442000_circ_g.9 Os04g0442000_circ_g.10 Os04g0442000_circ_g.11
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os04t0442000-01:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTTTTACAGGACAACCTAGGAGGCATCTGCTTACAACCGGTTGGAGTGTCTTTGTTAGCTCAAA
AAGATTGGTTGCTGGCGATGCATTTATCTTCCTGAGcaaagtgaactcaccagtctggatcctg
agcttcaagatcttgagaaatgcacagctcattccttttgcaagacattaacagcttcagatac
aagcacac
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 329
Transcript exons: 22008223-22008375,22008509-22008593,22008852-22008942
CAAAGTGAACTCACCAGTCTGGATCCTGAGCTTCAAGATCTTGAGAAATGCACAGCTCATTCCT
TTTGCAAGACATTAACAGCTTCAGATACAAGCACACATGGCGGTTTCTCTGTTCTTAGGAGGCA
TGCTGAAGAATGCCTTCCTCAGCTGGACATGTCTCAGAATCCACCATGTCAAGAACTGGTTGCC
AAAGATCTCCATGGAACTGAGTGGCATTTCCGTCACATCTTTCGTGGACAACCTAGGAGGCATC
TGCTTACAACCGGTTGGAGTGTCTTTGTTAGCTCAAAAAGATTGGTTGCTGGCGATGCATTTAT
CTTCCTGAG

Genomic sequence CAAAGTGAACTCACCAGTCTGGATCCTGAGCTTCAAGATCTTGAGAAATGCACAGCTCATTCCT
TTTGCAAGACATTAACAGCTTCAGATACAAGCACACATGGCGGTTTCTCTGTTCTTAGGAGGCA
TGCTGAAGAATGCCTTCCTCAGCTGGTTAGTATTAAAAGCATATTATGTCTCCACAGGTTGTTA
AGATTGTTATATCCAAGTGTCAAATATCTTCTTGAGTTCTCGTATGTAGCAGTACCAGTTTATG
ATATTATTGAATAGTGTGGTTGCTTTGCAGGACATGTCTCAGAATCCACCATGTCAAGAACTGG
TTGCCAAAGATCTCCATGGAACTGAGTGGCATTTCCGTCACATCTTTCGTGGTTAGCTTGAATC
TTATCATTCGGGTGTTCTGTTATGCTTTCAATAAAAGCAGGGCCAGCCATGTGTGGTCTAAAAA
AAATCTCATCATTTGGCATGATTCTTCCAATCTTGTTGGCACTATGTTGTCCTTATTATTTTGG
TGTAACACTTTATTTCTCAGCCACACATGCTCACCATTGTGTAGTAGCATGTGGAATATATAAG
CTGTATATCACTTTCAGGATCGCAATCTCATATCTTTCCATTTTTTTTTACAGGACAACCTAGG
AGGCATCTGCTTACAACCGGTTGGAGTGTCTTTGTTAGCTCAAAAAGATTGGTTGCTGGCGATG
CATTTATCTTCCTGAG
Conservation Information
Conserved circRNAs zma_circ_001047
PMCS 0.320426285
Functional Information
Coding potential Y
Potential coding position 22008513-22008298(+)
22008284-22008582(-)
Potential amino acid sequence MSQNPPCQELVAKDLHGTEWHFRHIFRGQPRRHLLTTGWSVFVSSKRLVAGDAFIFLSKVNSPV
WILSFKILRNAQLIPFARH*(+)
MSCAFLKILKLRIQTGEFTLLRKINASPATNLFELTKTLQPVVSRCLLGCPRKM*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017