Detail information of Zm00001d003601_circ_g.3


General Information
CircRNA Name Zm00001d003601_circ_g.3
ID in PlantcircBase zma_circ_001047
Alias circ437
Organism Zea mays
Position chr2: 49479478-49480045  JBrowse»
Reference genome AGPv4.38
Type   ei-circRNA
Identification method CIRI
Parent gene Zm00001d003601
Parent gene annotation Auxin response factor 6
Parent gene strand -
Alternative splicing Zm00001d003601_circ_g.2
Support reads 2
Tissues seedling leaves
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered Zm00001d003601_T001:3
Zm00001d003601_T006:3
Zm00001d003601_T003:3
Zm00001d003601_T004:3
Zm00001d003601_T007:3
Zm00001d003601_T002:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAGTGCTCGTATCTGAAGCTGTCAGTGTCTTGCAGAAGGAATGGGCAGTGCATTTTTCACGTTC
TTGTGGTTCAGCGTCCAGGCTGGTGAGTTCATTTTGcctcatgaagatgaatgcatccccagaa
accaatctttttgagctaacaaagacactccagccggtggtaaggagatgcctcttgggttgcc
ctgaaaga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTCATGAAGATGAATGCATCCCCAGAAACCAATCTTTTTGAGCTAACAAAGACACTCCAGCCG
GTGGTAAGGAGATGCCTCTTGGGTTGCCCTGAAAGAAACATGAGAAGGCAGGCATGAGACTAAG
AAATGGAAATGGAACTACACAGAATATTTCTTAGGCAATACTGGAGCAGATTACATCAAAATTA
AGAGATAGATACGAATCTAGAAAGGCTAGAATTTTCAAGCATAGTGAAGAGCACAAATCACCTC
GAAAAATGTGCCGAAAATGCCATTCAGTGCCATGGAGATCTTTGGCAACCAGTTCTTGGCAAGG
TGGATTTTGAGACATGTCCTACAAAAGGTTGCAGACAGTAATATATCTGCTAGTCAAGAAATCT
CTTTGAGTCATACAACGCTTTTGATGCTAACCAGCTGAGGAAGACATTCCTCAGCATGCCTCCG
AAGAACAGAAAACCCGCCGTGAGTGCTCGTATCTGAAGCTGTCAGTGTCTTGCAGAAGGAATGG
GCAGTGCATTTTTCACGTTCTTGTGGTTCAGCGTCCAGGCTGGTGAGTTCATTTTG
Conservation Information
Conserved circRNAs osa_circ_023936
PMCS 0.02274061
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017b