Detail information of Os04g0442000_circ_g.11


General Information
CircRNA Name Os04g0442000_circ_g.11
ID in PlantcircBase osa_circ_023942
Alias Os_ciR9352
Organism Oryza sativa
Position chr4: 22009773-22010112  JBrowse»
Reference genome IRGSP-1.0.38
Type   ei-circRNA
Identification method find_circ
Parent gene Os04g0442000
Parent gene annotation Similar to Auxin response factor 2 (ARF1-binding protein) (ARF1-
BP). (Os04t0442000-01)
Parent gene strand +
Alternative splicing Os04g0442000_circ_g.4 Os04g0442000_circ_g.5 Os04g0442000_circ_g.6 Os04g0442000_circ_g.7 Os04g0442000_circ_g.8 Os04g0442000_circ_g.9 Os04g0442000_circ_g.10
Support reads 2
Tissues root
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered Os04t0442000-01:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATTGTCCGTCCAGATAGAGTTTCACCATGGGAACTGGAACCATTGGATGCGAGTAATCCACAAC
CACCTCAGCCTCCATTGAGGAATAAGCGTGCAAGGCaggtttagtggaacaattattggtattg
ggagtgtgccagcaatgtcaaaatctccatgggcagattctgactggaaatctctgaaggtaat
tcatattt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AGGTTTAGTGGAACAATTATTGGTATTGGGAGTGTGCCAGCAATGTCAAAATCTCCATGGGCAG
ATTCTGACTGGAAATCTCTGAAGGTAATTCATATTTTAGTTTTGAATTTTGATGGTTAAATTGG
AAGATACTTTTTTGAGATGTTTTTTGTCCACTTATGTCTTGGTCTCTTGGTTGGTCCAGATCTG
ATTCTGTCCTGTAATTATTCGTAGGTCCAATGGGATGAACCTTCGGCTATTGTCCGTCCAGATA
GAGTTTCACCATGGGAACTGGAACCATTGGATGCGAGTAATCCACAACCACCTCAGCCTCCATT
GAGGAATAAGCGTGCAAGGC
Conservation Information
Conserved circRNAs NA
PMCS 0.269861005
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015