Detail information of Os04g0442000_circ_g.4


General Information
CircRNA Name Os04g0442000_circ_g.4
ID in PlantcircBase osa_circ_041766
Alias NA
Organism Oryza sativa
Position chr4: 22007842-22008259  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRI-long
Parent gene Os04g0442000
Parent gene annotation Similar to Auxin response factor 2 (ARF1-binding protein) (ARF1-
BP). (Os04t0442000-01)
Parent gene strand +
Alternative splicing Os04g0442000_circ_g.5 Os04g0442000_circ_g.6 Os04g0442000_circ_g.7 Os04g0442000_circ_g.8 Os04g0442000_circ_g.9 Os04g0442000_circ_g.10 Os04g0442000_circ_g.11
Support reads NA
Tissues leaf
Exon boundary   No-No
Splicing signals   AT-AG
Number of exons covered Os04t0442000-01:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TATAAATCATGTCCTTTTGTCATTCACATTGATTGATTTGTTTGCTTGCATTTGCTTGTTCAGC
AAAGTGAACTCACCAGTCTGGATCCTGAGCTTCAAGcgtggtcaacgtagaactccgggtcagt
gtttctttaatctgtctggtgtaacctcccatgtgagtgtgctggaaatcgccagtccggttac
tgtagctc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 116
Transcript exons: 22007842-22007863,22007984-22008040,22008223-22008259
CGTGGTCAACGTAGAACTCCGGGCGGAGGCTGATTCAGATGAAGTTTATGCTCAAATTATGCTG
CAACCAGAAGCTGATCAAAGTGAACTCACCAGTCTGGATCCTGAGCTTCAAG

Genomic sequence CGTGGTCAACGTAGAACTCCGGGTCAGTGTTTCTTTAATCTGTCTGGTGTAACCTCCCATGTGA
GTGTGCTGGAAATCGCCAGTCCGGTTACTGTAGCTCGAAATATTATTCAATGCTTACCGGTTGA
GTTCTGCAATGCAGGCGGAGGCTGATTCAGATGAAGTTTATGCTCAAATTATGCTGCAACCAGA
AGCTGATGTGAGTATATTCTCTACCCCCCTGCCAATATGTAAGGGGGGATATATATTGCTTTTG
CAATGCATGCTATATTGCTACTGTAGTATTTCTACTTTCTTATTGTAGCAGCCTTTAATGGTTA
TAAATCATGTCCTTTTGTCATTCACATTGATTGATTTGTTTGCTTGCATTTGCTTGTTCAGCAA
AGTGAACTCACCAGTCTGGATCCTGAGCTTCAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.172417165
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References this study