Detail information of AT2G02760_circ_g.5


General Information
CircRNA Name AT2G02760_circ_g.5
ID in PlantcircBase ath_circ_012607
Alias NA
Organism Arabidpsis thaliana
Position chr2: 774604-774693  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method PcircRNA_finder
Parent gene AT2G02760
Parent gene annotation UBC2
Parent gene strand +
Alternative splicing AT2G02760_circ_g.1 AT2G02760_circ_g.2 AT2G02760_circ_g.3 AT2G02760_circ_g.4
Support reads 1
Tissues aerial
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G02760.2:1
AT2G02760.1:1
AT2G02760.4:1
AT2G02760.3:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AACCACCAACAGTGCGGTTTGTTTCACGGATGTTCCATCCAAACAgtactttcaaattgtcact
gcagttttcggaagattatccaaata
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTACTTTCAAATTGTCACTGCAGTTTTCGGAAGATTATCCAAATAAACCACCAACAGTGCGGTT
TGTTTCACGGATGTTCCATCCAAACA
Conservation Information
Conserved circRNAs NA
PMCS 0.30648537
Functional Information
Coding potential Y
Potential coding position 774678-774690(+)
Potential amino acid sequence MFHPNSTFKLSLQFSEDYPNKPPTVRFVSRMFHPNSTFKLSLQFSEDYPNKPPTVRFVSRMFHP
NSTFKLSLQFSEDYPNKPPTVRFVSRMFHPN(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017