Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT2G02760_circ_g.2 |
ID in PlantcircBase | ath_circ_012604 |
Alias | At_ciR1346 |
Organism | Arabidpsis thaliana |
Position | chr2: 774259-774866 JBrowse» |
Reference genome | TAIR10.38 |
Type | ue-circRNA |
Identification method | CIRCexplorer, find_circ |
Parent gene | AT2G02760 |
Parent gene annotation |
UBC2 |
Parent gene strand | + |
Alternative splicing | AT2G02760_circ_g.1 AT2G02760_circ_g.3 AT2G02760_circ_g.4 AT2G02760_circ_g.5 |
Support reads | 3/1 |
Tissues | leaf/aerial |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | AT2G02760.2:4 AT2G02760.1:4 AT2G02760.4:4 AT2G02760.3:4 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.235259702 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
774271-774863(+) |
Potential amino acid sequence |
MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYP NKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSKRRMSTPARKRLMRDFK RLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFH PNIYADGSICLDILQNQWSPIYDVAAILTSIQSKRRMSTPARKRLMRDFKRLQQDPPAGISGAP QDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL QNQWSPIYDVAAILTSIQSKRRMSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFG PDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAIL TSIQ(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ye et al., 2015;Chu et al., 2017 |