Detail information of AT2G02760_circ_g.2


General Information
CircRNA Name AT2G02760_circ_g.2
ID in PlantcircBase ath_circ_012604
Alias At_ciR1346
Organism Arabidpsis thaliana
Position chr2: 774259-774866  JBrowse»
Reference genome TAIR10.38
Type   ue-circRNA
Identification method CIRCexplorer, find_circ
Parent gene AT2G02760
Parent gene annotation UBC2
Parent gene strand +
Alternative splicing AT2G02760_circ_g.1 AT2G02760_circ_g.3 AT2G02760_circ_g.4 AT2G02760_circ_g.5
Support reads 3/1
Tissues leaf/aerial
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G02760.2:4
AT2G02760.1:4
AT2G02760.4:4
AT2G02760.3:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATGTTGTGCAGTTTATGCTGATGGGAGTATATGCTTGGACATTCTCCAAAACCAATGGAGTCCA
ATATACGATGTCGCTGCTATACTAACCTCCATTCAGagtaagagaaggatgtcgactccagcga
ggaagagattgatgagggatttcaagaggttgcagcaagacccacctgcaggaattagtggtgc
tccacaag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AGTAAGAGAAGGATGTCGACTCCAGCGAGGAAGAGATTGATGAGGGATTTCAAGAGGTTGCAGC
AAGACCCACCTGCAGGAATTAGTGGTGCTCCACAAGACAACAATATCATGTTGTGGAATGCTGT
TATATTCGGGTAATTGAACTAAAGTAACAAAAAAAAAAAACGATACTTGATAGGTTTCTCTGCA
CTGTACTTATTAAAGCTTCTGATTGTGGATTTGCAGGCCTGATGATACCCCTTGGGATGGAGGT
AAAGTTTTGTTATTGTAATCACTTAACTTGAGAATTTTGGCAATCTTTTATGTATCTGGTCTTA
TGTCTCTTTTGTATGGTCTTGTTAGGTACTTTCAAATTGTCACTGCAGTTTTCGGAAGATTATC
CAAATAAACCACCAACAGTGCGGTTTGTTTCACGGATGTTCCATCCAAACAGTAAGTTGGAGAT
TATCACATCATAGTTTCTTACTCTGAGTACATGTGATCAACGAAAGCTCACACTTGGTCAATGT
TGTGCAGTTTATGCTGATGGGAGTATATGCTTGGACATTCTCCAAAACCAATGGAGTCCAATAT
ACGATGTCGCTGCTATACTAACCTCCATTCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.235259702
Functional Information
Coding potential Y
Potential coding position 774271-774863(+)
Potential amino acid sequence MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYP
NKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSKRRMSTPARKRLMRDFK
RLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFH
PNIYADGSICLDILQNQWSPIYDVAAILTSIQSKRRMSTPARKRLMRDFKRLQQDPPAGISGAP
QDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL
QNQWSPIYDVAAILTSIQSKRRMSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFG
PDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAIL
TSIQ(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017