Detail information of AT2G02760_circ_g.4


General Information
CircRNA Name AT2G02760_circ_g.4
ID in PlantcircBase ath_circ_012606
Alias NA
Organism Arabidpsis thaliana
Position chr2: 774487-774697  JBrowse»
Reference genome TAIR10.38
Type   ei-circRNA
Identification method CIRI
Parent gene AT2G02760
Parent gene annotation UBC2
Parent gene strand +
Alternative splicing AT2G02760_circ_g.1 AT2G02760_circ_g.2 AT2G02760_circ_g.3 AT2G02760_circ_g.5
Support reads 3
Tissues aerial
Exon boundary   Yes-No
Splicing signals   GT-AG
Number of exons covered AT2G02760.2:2
AT2G02760.4:2
AT2G02760.1:2
AT2G02760.3:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGTTAGGTACTTTCAAATTGTCACTGCAGTTTTCGGAAGATTATCCAAATAAACCACCAACAGT
GCGGTTTGTTTCACGGATGTTCCATCCAAACAGTAAgcctgatgataccccttgggatggaggt
aaagttttgttattgtaatcacttaacttgagaattttggcaatcttttatgtatctggtctta
tgtctctt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GCCTGATGATACCCCTTGGGATGGAGGTAAAGTTTTGTTATTGTAATCACTTAACTTGAGAATT
TTGGCAATCTTTTATGTATCTGGTCTTATGTCTCTTTTGTATGGTCTTGTTAGGTACTTTCAAA
TTGTCACTGCAGTTTTCGGAAGATTATCCAAATAAACCACCAACAGTGCGGTTTGTTTCACGGA
TGTTCCATCCAAACAGTAA
Conservation Information
Conserved circRNAs NA
PMCS 0.227934755
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017