Detail information of AT2G02760_circ_g.1


General Information
CircRNA Name AT2G02760_circ_g.1
ID in PlantcircBase ath_circ_012603
Alias NA
Organism Arabidpsis thaliana
Position chr2: 774259-774395  JBrowse»
Reference genome TAIR10.38
Type   ue-circRNA
Identification method PcircRNA_finder
Parent gene AT2G02760
Parent gene annotation UBC2
Parent gene strand +
Alternative splicing AT2G02760_circ_g.2 AT2G02760_circ_g.3 AT2G02760_circ_g.4 AT2G02760_circ_g.5
Support reads 1
Tissues aerial
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G02760.1:1
AT2G02760.4:1
AT2G02760.2:1
AT2G02760.3:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCACCTGCAGGAATTAGTGGTGCTCCACAAGACAACAATATCATGTTGTGGAATGCTGTTATAT
TCGGagtaagagaaggatgtcgactccagcgaggaagagattgatgagggatttcaagaggttg
cagcaagac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AGTAAGAGAAGGATGTCGACTCCAGCGAGGAAGAGATTGATGAGGGATTTCAAGAGGTTGCAGC
AAGACCCACCTGCAGGAATTAGTGGTGCTCCACAAGACAACAATATCATGTTGTGGAATGCTGT
TATATTCGG
Conservation Information
Conserved circRNAs NA
PMCS 0.454380842
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017