Detail information of 5_circ_ag.2


General Information
CircRNA Name 5_circ_ag.2
ID in PlantcircBase ath_circ_037838
Alias Ath_circ_FC3261
Organism Arabidpsis thaliana
Position chr5: 4093838-4098313  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method CIRI, find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing 5_circ_ag.3 5_circ_ag.4 AT5G12950_circ_g.1 5_circ_ag.2 AT5G12950_circ_g.3 AT5G12950_circ_g.4 5_circ_ag.5 5_circ_ag.6 5_circ_ag.7 5_circ_ag.8 5_circ_ag.9 5_circ_ag.10
Support reads 46
Tissues root, leaf, aerial, inflorescences, whole_plant
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTGGCCTATAACTTCCGTAAAGAAGCTGGTCTTAATGCTCCTGGAGTTCCCTATGGAGGATGGG
AGAAACCAGATAGTGAACTCCGTGGCCATTTTGTCGgtcactatttgagtgcaacagcttatat
gtgggctagtactcataatgatactctcaaggagaaaatgtcagctcttgtctcagctctatcg
gaatgcca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTCACTATTTGAGTGCAACAGCTTATATGTGGGCTAGTACTCATAATGATACTCTCAAGGAGAA
AATGTCAGCTCTTGTCTCAGCTCTATCGGAATGCCAACAGAAGTCTGGCACAGGATATCTCTCT
GCTTTTCCTTCCAGTTTTTTCGACCGCTTTGAAGCTATAACACCTGTTTGGGCTCCTTACTACA
CCATTCACAAGGTGAAAATAAGTTAGACTCTTTAACTGTGATGTAGTTTGATATGCTTATGTTT
GCAAAAGAGGTTCAACTTTGTCTTAATTTTTGACAGATTTTAGCTGGTCTGGTTGATCAATACA
AGTTGGCTGGGAACAGTCAAGCTTTAAAGATGGCAACCGGGATGGCTGATTATTTCTATGGCCG
TGTTCGTAATGTGATAAGGAAGTACAGTGTTGAACGACATTGGCAATCACTAAACGAAGAGACT
GGTGGCATGAATGATGTTCTTTATCAGCTATACAGCATCACTGTGGGTTAAAATCTAATCAGAC
TCAAAAAGGCAACCTTAGATTTCTATGTAGCTCTGTGTCATTTTTTAGTTTATTGGACTCTGCA
GGGAGATTCCAAGTATTTGCTGCTCGCACATCTCTTTGACAAGCCTTGCTTTCTCGGAGTCCTC
GCAATTCAGGTAGTTTACTTGATGATTAGCTTGAAGCCTTGAAGAGATGTGAATGGTAAGGTCA
CATAACTTGACATGTTTGTTTGCAGGCCGATGATATTAGTGGATTCCACGCTAATACACATATT
CCCATCGTCGTTGGATCCCAACAACGGTATGAAATCACTGGTGATCTACTCCATAAGGTATCGA
AGAGTAACCAAGAAAAGTATGACATTTTTATCAAAGAAGATATTGGTTCTCTTGATTCTGAAAT
CTGCATTTCCAGGAAATCTCGATGTTCTTTATGGACATTTTTAATGCTTCTCACAGCTATGCAA
CAGGAGGAACATCAGTCAGTGAGTTCTGGTACTACCATTACCTGACTTTAGTCTTTGGTTCATT
GTAACATGACTTTTTGTTTTAAGTTCTAACCATGATTTGGGAATGGTAATATTAGGCAAGATCC
CAAGAGAATGGCGACTGCACTGCAAACTGAAAACGAGGAATCATGTACTACTTATAACATGCTC
AAGGTAGGATTTTAAACTTTTCCCCCTCTTTCTATTTGCTCAAGGTAACATACTAACATATCAA
CACTTGTACAATTTCAGGTCTCTAGGAATCTGTTCAGATGGACAAAAGAGGTTAGCTATGCAGA
CTATTACGAGCGCGCCTTGACCAACGGCGTGTTGGGAATTCAAAGAGGAACCCAGCCTGGACTG
ATGATCTACATGCTCCCATTAGGTAAAGGTGTTTCTAAGGCTGTGACTTATCACGGTTGGGGAA
CACCTTATGATTCCTTCTGGTGTTGCTATGGCACTGGTAAACTCTTAACCACAATTCATCTGGT
TTTCTACATTTTTGTAAGATACAAAAGTAAGATAAATTTTGAGGGTCTTTTTTTGTTTCTGTCC
ACAGGAATTGAATCCTTCTCAAAACTGGGAGATTCCATATATTTTCAAGAAGATGGTGCAACTC
CAGCTCTTTATGTCACCCAATATATATCAAGCTCACTTGATTGGAAATCTGCTGGTCTTTCAAT
ATCTCAGAAAGTTAATCCTGTTGTGTCGTGGGATCCGTACATGCGTGTGACATTCACTCTTTCT
TCTTCCAAAGTGGTAAAACTTTTGCACAACTTGATGCAACATGTTACATTGAAGAAAGAGTCTG
ATGGATCCAATTTTGTTGCAGGGAGTGGCGAAGGAGTCGACTTTGAATCTAAGAATTCCTGTTT
GGACTAACTCTATAGGTGCCAAAGTATCTTTGAATGGGCGACCCTTAAACGTACCAACTTCAGG
TGATTTGAGCATTAGGTTCTAAAAAGCAGAACTCGCTTGACTGTTACAGTCTCTAGTTTGTGAA
ATGAGAATCATATTGTACCTGTCTTTTTCTTTGCAGGTAATTTCCTATCAATCAAACAGAAATG
GAAATCTGGTGATCAAGTAACCATGGAGCTACCAATGAGTATCAGAACCGAAGCTATAAAAGGT
ATAAACACACAGTTTTGCTTTTGTAGACTGGTACCCTTACTCCGGCAATCTATAACTAGCAGTA
TATGTATAAATTGTATGCAACTCTGTTTTGACATTATTTTGTGAGTATTTCAGATGATCGGCCA
GAGTACGCATCTCTTCAAGCCATACTCTATGGCCCCTACTTGTTAGCCGGACACACGAGCAGGG
ACTGGAGCATCACAACTCAGGCTAAACCTGGAAAATGGATAACCCCTATACCTGAAACTCAAAA
CAGTTACCTTGTCACACTCTCACAACAATCTGGAAACGTATCTTACGTGTTTTCAAATAGCAAC
CAAACCATCACAATGAGAGTATCACCCGAGCCAGGGACACAAGATGCCGTTGCAGCGACTTTCA
GGCTCGTGACTGATAATTCTAAACCACGGATTTCGGGTCCAGAAGGACTAATTGGAAGGCTGGT
CATGCTTGAGCCGTTTGATTTCCCTGGCATGATTGTAAAGCAAGCAACTGATAGCTCCCTCACA
GTTCAAGCTTCTTCTCCTAGTGACAAAGGAGCTTCTAGCTTTCGGTTAGTATCTGGACTTGACG
GGAAGCTAGGAAGCGTTTCGTTAAGACTAGAGAGCAAAAAAGGTTGTTTTGTGTACAGCGATCA
AACCCTAAAGCAAGGGACAAAACTAAGGCTAGAATGTGGTTCGGATGCGACTGATGAGAAGTTT
AAAGAGGCAGCAAGCTTTAGTTTAAAGACAGGAATGCATCAATACAATCCAATGAGTTTCGTGA
TGAGCGGAACACAGAGGAACTTTGTGTTATCGCCATTGTTTAGCTTAAGAGATGAAACATACAA
TGTGTACTTCAGTGTGCAAACTTGAAGAAAGAAACCCTTATTGGGTGAAAATATAAGAAAGAAA
AGTCTCATTTGAAATATAGACATGTGTTTAGATGTTTAGCCTCTTAGGTTTGTTTGTGATTTTG
TGTTCTGCAATGTCATCTAAAAATGTATGTTGCTGTTACAATAAATATAAACAAATGTGTTTTT
ATAAATTGTGCTAACGATGAATCCATGTCTTTCTTTATATTCTAAATATAGAGTGGAGAATAGT
GTGTTGCCTTGAGCTTTCATGAAATAATATTCTCATATGTGATCTGTTGCAGAAATTAGAATAC
CATAGTTATTGTATCAAAATATCCAACACATGAAAAGTAAAATATCCAACAAAATCACACGCAT
AAACATTACTTACGAATACGATAGTTATTGTGTTTATGCGTGTGATTTTCACTTTGGTGGAGAT
AACTTCTATAGAAGAGGGGAGAATATTATACAGTATTTTGGAAATATGTTATAATTTTGGAGAA
ATCACAAATCAAAGTTTATAATTACATTCAGGGAGATTTTACAAGATTATAGAAAAACTTTATA
AGATTTTGGAAAAACTAATCATAGAAATTATACAAAATTCTCTAGTAATCATTTAAAATCTTTG
ACATATCTACTTTCTATATTTTTTAAAAGTCATTAAAATTCTTTCAAAATCACAAACCAATAAC
ACCCCCTTAATCTTTTTTTACAACAAATCCTCCTCTGTTTTTATCCAAATCCTCTCTGTTTTTA
TCCAAATCCTCCTCTGTTTTTCTCTTTCACTTGATTGAATTCTTTTTTTAGCAGACATTGCTTC
AATCGTTAGAAAATCTATTTTTGGCACACATTTTCTTTAGAAATCTTTTGCTTTATAAACATCT
CTTCTCATTATTTTCTTCTTCCATTTCAAATCCCCTCTCCCTAACAGTTTTGAGTCTCTTGGAT
TCTGAACGTGGGATCTGGGGATTTGAATAGTTACACTTTTTTGTTTATGAAAAAACATACGATG
AAGTCTGGTGTGATCATAACCATTGCTCTGTTATTATACACAAGCTTTCTTCTTGTTTGTCTGG
CGAAAGAGTGTACAGACATTCCTACGAAGCTCTCATCGCATACTCTCCGCAGCGAGCTTCTGCA
ATCACAGAACGCAAATTTGAAGTCAGAGGAGTTCTCTCATTACCATTTAACTCCAACTGATGAC
TCTGCTTGGTCTACTTTGTTGCCAAGGAAGATGTTGAAAGAAGAGACTGATGATTTTGCTTGGA
CTATGTTGTATAGAAAGTTCAAGGACTCTAATTCCTCTGGTAACTTTCTCAAGGATGTCTCTTT
GCACGACGTTAGGCTGGACCCGAGCTCTTTCCATTGGAGGGCTCAGCAGACAAACCTTGAGTAT
CTATTGATGTTGGATGTTGATGGTTTGGCCTATAACTTCCGTAAAGAAGCTGGTCTTAATGCTC
CTGGAGTTCCCTATGGAGGATGGGAGAAACCAGATAGTGAACTCCGTGGCCATTTTGTCG
Conservation Information
Conserved circRNAs NA
PMCS 0.750102942
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017;Chen et al., 2017a