Detail information of Os07g0570100_circ_ag.2


General Information
CircRNA Name Os07g0570100_circ_ag.2
ID in PlantcircBase osa_circ_034398
Alias Os_ciR948
Organism Oryza sativa
Position chr7: 22939652-22975917  JBrowse»
Reference genome IRGSP-1.0.38
Type   ag-circRNA
Identification method CIRI, find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os07g0570100_circ_ag.1 Os07g0570100_circ_ag.3 Os07g0570100_circ_ag.4 Os07g0570100_circ_ag.5 Os07g0570100_circ_ag.6 Os07g0570100_circ_ag.7 Os07g0570100_circ_g.1 Os07g0570100_circ_ag.2 Os07g0570100_circ_g.3 Os07g0570100_circ_ag.4 Os07g0570100_circ_g.5 Os07g0570100_circ_ag.6 Os07g0570100_circ_ag.7 Os07g0570100_circ_ag.8 Os07g0570100_circ_ag.9 Os07g0570100_circ_ag.10 Os07g0570100_circ_ag.11 Os07g0570100_circ_ag.12 Os07g0570100_circ_ag.13 Os07g0570300_circ_ag.1 Os07g0570300_circ_g.1 Os07g0570300_circ_g.2 Os07g0570300_circ_ag.3 Os07g0570300_circ_g.4 Os07g0570300_circ_g.5 Os07g0570300_circ_g.6 Os07g0570300_circ_ag.7 Os07g0570300_circ_g.8 Os07g0570300_circ_g.9 Os07g0570300_circ_ag.10 Os07g0570300_circ_ag.11 Os07g0570300_circ_g.12 Os07g0570300_circ_ag.13 Os07g0570300_circ_ag.14 Os07g0570300_circ_g.15 Os07g0570300_circ_ag.16 Os07g0570300_circ_ag.17 Os07g0570500_circ_g.1 Os07g0570500_circ_g.2 Os07g0570500_circ_g.3 Os07g0570500_circ_g.4 Os07g0570500_circ_g.5 Os07g0570500_circ_g.6
Support reads 114/3
Tissues root/shoot, anther
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTTGTATACTGAGTATCTTCTTTCGTGGTGCATTAACTTTGACATGATTATCGAAGAACTCAAT
CAGCTCCTCTTTCTTGAGATCCCTCAGTGCAGCAACctccgcctcttttctatcaaatttcaga
gttccttccgaaatttctttccagaagaacgctgattcctctcttatattcttgtatttctcca
gcttcatg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 3310
Transcript exons: 22939652-22939775,22940360-22940407,22940581-22940809,22
940895-22941100,22941505-22941605,22944090-22944125,2294
5027-22945132,22946863-22946955,22949529-22949592,229496
92-22949816,22952987-22953021,22954396-22954473,22954488
-22954688,22955945-22956111,22956782-22956903,22957055-2
2957264,22957568-22957772,22959783-22959891,22960875-229
60905,22961204-22961390,22962705-22962802,22963818-22963
906,22963918-22964018,22966440-22966479,22966568-2296669
1,22972151-22972228,22972344-22972444,22975716-22975917
CTCCGCCTCTTTTCTATCAAATTTCAGAGTTCCTTCCGAAATTTCTTTCCAGAAGAACGCTGAT
TCCTCTCTTATATTCTTGTATTTCTCCAGCTTCATGTCAATGAGAGCATTCACGTTGCTCAAGC
AATTGAAGTAGAACATTTTGTTTGAGATCATCCTGATGAATCTGCTGAATATAATGCAGGATGG
AAGAATTTTTTTCATCCTGGTGATTTAGGCACAATGCTGGATAATAATACCTCCAACCCCTTTC
AAGTTTTACAATTCGCTTTGTAAGATGCTGTGATGGGGGTAATGCTTTGCAGAAACTGATGGGT
GCATTGAATAAGGTGTCTTCAACATGCTGTATAACACTTTTTGCTTCACCCGGTTCCATGTTCC
CTAATATAGTAATATCGCCAGCAAAATAGCATTCAATAAATGTCTTGCCCAGAAGACGAGGCAA
AAAAATCTGTAGATCGCTTGCTTCAATATGAGAAACTGCAGCAAGTTTTTCATCCCATGCCCAA
GTTTGTTCCTCTAATATCAATGAACAATAGTAAAATGCCTGCTCATATGGTTGTCGAAATTTGA
AATTCTCGTAGTCCTTTATTATAGTTTCCTGACCTTTATAACAGCAAAACGGTCAACCTTCACT
TCAAACTCAGCAATTTTTCCAATGACAGTATCCAGAAGGGTTCTCATTTTGTCATTATAACCGA
CCATTTGCCCTTCAAACTTTTTTGATTCCCAGAATATTCTCTAACATTATCTGGAGTCAAGTCA
TTTAATATATTCTGAATAGCATCTGGAGAAAACTTTGATGGCACAGATGATGCAATCAGCCAAT
CTTCCGGCGGAAAGATCTCTGCATGTTTGAGGAAATATTGACAACATAATGGATAGGAGGACTC
TTGTCTCGGTAGTGGAATCCCATCTCAGAAATAGCTACAAGCTTGACTCCAGTATTCCTGACAT
CAGAGAACTTATTTTCAACAAGATTTTGAAGGTTGTCAAGACTCTCTCTTTGCCATACACAACA
AGTTGCATCAAATTAGCTGAGTAATGTGAATTATAAAATTTAATAAGCTCTTCCAGTGTGTCCA
ATCCTTCCTTATTTGGATTAACCAGCAAAGTGTCCAGGTTTCCTGGGTATTTCTCGCTAGCATA
GAAAAGCATATGCTCCAAGGAAATGTGCAAGGCCAGGGAGCCTCTCGGGATCGCAGAAGTAGCC
CACCGAGACATTCATCGACGCCGCCGCCTCCGGGATTCACCCATTCAAGCCAAAAACCCAGGAG
GCAGGCACCAAAACCCCCGGCACATCCCCGATCGAAGGAGCCAGCGAAAGCACGGAGACCTTGT
CGGTGTCGGGGTCGCTGACGAGGAGGCACTCGAGGGCGTTGGGGAGCACGACGCGGCGGTACCC
GCGCTTGTCGTTGCGGGGCCTGGTGATCTCCGCGTCGCGGAATTTGGTCGTGGCTCATCGTGGA
CTATCTTTTCGTACTCCGAGGAATGGAGACCGCCGTAAACTTGAATACTGAGTATCTTCTTTTG
TGGTGCATTAACTTTGACATGATTGTTGAAGAACTCTATCAACTCCTCTTTCTTAAGATCCCTC
AGTGCAGCAACCTCTAAGCAGTGTTATGTAGCCAAGTTGCTCAACTGAACGTAATTGGTGAAAA
GCTGGTTGCTTAGCAACAAGAGCAAGCAACTGGAGTATAACATTTTTTTTGAGATCATCCTGAT
GAATCTGCTGAATATAATGCAGAAGGCAAGAATTTTCATCCTGGTGATTTAGGCATAATGCTGG
ATAATAATACCTCAAACCCCTTTCAAGCTTTACAATTCGCTTTGTAAGATGCTGTGATGAGGGT
AATGCTTTGCACAGACTGACAGGTGCATTGAATAAGATGTCTTCAACATGCTGCATAACACCTT
TTACCGCACCCGGTTCCATGTTCCCCCAGCAAAGTAGCTCTCAATAAATGTTTTCCCCAGCAGA
TGAGGCAAAAACTTCTCGAGATCGCTAGCTTCAATTTGAGATACTGCAGCAAGTTCTTCATCCC
ATGCCCACGTTTGCTCCTCTAATATCAATGAACAATAGTAGAAAGCTTGCTGATATGGTTGCCG
AAATTTGAAATTCTCATACTCCTTTGTTATAGTTTCCTCCTTTATCACAGAAAAACGGTCAGCC
TTAACTTCAAACTCAGCAATTTTCCCAATAACAGTCTCCAAAAGAGTTCTCATTTTGTCATTGT
AGCCAACCATGGTTATCTGAATAAAGACCAGCAACTTGAGCATCATAAGCCATAATCATTTAAA
TAATCCATGAGCAACCTTGTGAATACATCAGTAAGAACTGATGATTCAGGAGAACTACGGGACA
GTGGACAGTGGAAATCCATCTTGATATAGGCCTTGGGTGTGAAGAACATTGTATCAGGTTTATA
CCACACTCTGGAAAACAGTGTTTTCCTCAACATACAAGGAAAACTTCAGGAGTCAACTCATTTA
ATATACCCTGAATAGCATCTGGGGAAAATTTTGATGGCACGGACGATGCAATCAGCCAATCTTC
CGGCGGATAGATCTGCTGCATGTTTGAGGAAATATTGGCAACATAATGGATAGGAGGACCCTTG
TCTCGATAGTGGAATCCTGTCTCACAAATAGTTTGAAGCTCAAGTGAGATAGTTAGTTGTGAGC
ATTGCAAAATGGACTAGCGCATCATCATAATGTTTCAAAACCAAATTGACTCAGTCGGTACTGT
TTTAACAGTCAGACTTATTTTCAACAAGAGTTTGAAGATTGTCAAGACTCTCTCTTTCCCATAC
ACAACAAGCTGCATCAAGTTGGCTGAGTAGTGTGAATCATAAAATTTAATAAGCTCAAGCCTTG
TGTCCAATCCTTTCTCCTTTGGTTTAACCTCCAAAGTGTCCCAATTTCCCAAGGAAGTGCGCGA
GCCCCTCGAGCCCCTCGGGATCGCAGAAGTAGCCCACCGAGACGTTCATCGACGCCGCCGCCTA
CCTTGTCGGTGTCGGGGTCGCTGACGAGGAGGCACTCGAGGTCGTTGGGGAGCACGACGCGGCG
GTACCCGCGCTTGTCGTTGCGTGGCCTGGTGATCTCTCGACCTCCTGAAGCTGAATATATCGGT
TATTTGATAGGAATGCGGCTGTGGCTCGTCGTGAACTACCTTTTCGTACTCGTTGGTGTGGAGA
CGGCCGTAGACTTGTATACTGAGTATCTTCTTTCGTGGTGCATTAACTTTGACATGATTATCGA
AGAACTCAATCAGCTCCTCTTTCTTGAGATCCCTCAGTGCAGCAAC

Genomic sequence TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.
Conservation Information
Conserved circRNAs NA
PMCS 0.995384866
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs osa-miR2871b-3p osa-miR5499 osa-miR2275c
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017