Plant Circular RNA Database

Detail information of Os07g0570100_circ_ag.5

			
						 General Information
					
						CircRNA Name
						Os07g0570100_circ_ag.5
					
						ID in PlantcircBase
						osa_circ_034401
					
						Alias
						Os_ciR1548
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr7: 22940581-22976642  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							ag-circRNA							
									
						Identification method
						find_circ
					
						Parent gene
						
							NA						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						NA
					
						Alternative splicing
						
							Os07g0570100_circ_ag.1 Os07g0570100_circ_ag.2 Os07g0570100_circ_ag.3 Os07g0570100_circ_ag.4 Os07g0570100_circ_ag.6 Os07g0570100_circ_ag.7 Os07g0570100_circ_g.1 Os07g0570100_circ_ag.2 Os07g0570100_circ_g.3 Os07g0570100_circ_ag.4 Os07g0570100_circ_g.5 Os07g0570100_circ_ag.6 Os07g0570100_circ_ag.7 Os07g0570100_circ_ag.8 Os07g0570100_circ_ag.9 Os07g0570100_circ_ag.10 Os07g0570100_circ_ag.11 Os07g0570100_circ_ag.12 Os07g0570100_circ_ag.13 Os07g0570300_circ_ag.1 Os07g0570300_circ_g.1 Os07g0570300_circ_g.2 Os07g0570300_circ_ag.3 Os07g0570300_circ_g.4 Os07g0570300_circ_g.5 Os07g0570300_circ_g.6 Os07g0570300_circ_ag.7 Os07g0570300_circ_g.8 Os07g0570300_circ_g.9 Os07g0570300_circ_ag.10 Os07g0570300_circ_ag.11 Os07g0570300_circ_g.12 Os07g0570300_circ_ag.13 Os07g0570300_circ_ag.14 Os07g0570300_circ_g.15 Os07g0570300_circ_ag.16 Os07g0570300_circ_ag.17 Os07g0570500_circ_g.1 Os07g0570500_circ_g.2 Os07g0570500_circ_g.3 Os07g0570500_circ_g.4 Os07g0570500_circ_g.5 Os07g0570500_circ_g.6 						
					
						Support reads
						16
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						NA

General Information
CircRNA Name	Os07g0570100_circ_ag.5
ID in PlantcircBase	osa_circ_034401
Alias	Os_ciR1548
Organism	Oryza sativa
Position	chr7: 22940581-22976642 JBrowse»
Reference genome	IRGSP-1.0.38
Type	ag-circRNA
Identification method	find_circ
Parent gene	NA
Parent gene annotation	NA
Parent gene strand	NA
Alternative splicing	Os07g0570100_circ_ag.1 Os07g0570100_circ_ag.2 Os07g0570100_circ_ag.3 Os07g0570100_circ_ag.4 Os07g0570100_circ_ag.6 Os07g0570100_circ_ag.7 Os07g0570100_circ_g.1 Os07g0570100_circ_ag.2 Os07g0570100_circ_g.3 Os07g0570100_circ_ag.4 Os07g0570100_circ_g.5 Os07g0570100_circ_ag.6 Os07g0570100_circ_ag.7 Os07g0570100_circ_ag.8 Os07g0570100_circ_ag.9 Os07g0570100_circ_ag.10 Os07g0570100_circ_ag.11 Os07g0570100_circ_ag.12 Os07g0570100_circ_ag.13 Os07g0570300_circ_ag.1 Os07g0570300_circ_g.1 Os07g0570300_circ_g.2 Os07g0570300_circ_ag.3 Os07g0570300_circ_g.4 Os07g0570300_circ_g.5 Os07g0570300_circ_g.6 Os07g0570300_circ_ag.7 Os07g0570300_circ_g.8 Os07g0570300_circ_g.9 Os07g0570300_circ_ag.10 Os07g0570300_circ_ag.11 Os07g0570300_circ_g.12 Os07g0570300_circ_ag.13 Os07g0570300_circ_ag.14 Os07g0570300_circ_g.15 Os07g0570300_circ_ag.16 Os07g0570300_circ_ag.17 Os07g0570500_circ_g.1 Os07g0570500_circ_g.2 Os07g0570500_circ_g.3 Os07g0570500_circ_g.4 Os07g0570500_circ_g.5 Os07g0570500_circ_g.6
Support reads	16
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	NA

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							CAAGTTGTTCAACTGAACGTAATTGGTGAAAGGCTGGTTGCTTAGCAACAAGGGCAAGCAACTG
AAGTAGAACATTTTGTTTGAGGTCATCCTGATGAATctgaatataatgcaggatggaagaattt
ttttcatcctggtgatttaggcacaatgctggataataatacctccaacccctttcaagtttta
caattcgc

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 2771
Transcript exons: 22940581-22940793,22940895-22941040,22941506-22941637,22
944088-22944125,22945027-22945132,22946863-22946951,2294
7679-22947698,22947976-22948103,22949528-22949592,229496
92-22949807,22954425-22954473,22954581-22954700,22955955
-22956111,22956181-22956219,22957055-22957144,22957157-2
2957273,22957568-22957684,22957733-22957772,22959783-229
59876,22961204-22961393,22962721-22962802,22963818-22963
866,22966440-22966479,22966568-22966680,22972161-2297222
8,22972345-22972433,22975808-22975919,22975986-22976025,
22976531-22976642
CTGAATATAATGCAGGATGGAAGAATTTTTTTCATCCTGGTGATTTAGGCACAATGCTGGATAA
TAATACCTCCAACCCCTTTCAAGTTTTACAATTCGCTTTGTAAGATGCTGTGATGGGGGTAATG
CTTTGCAGAAACTGATGGGTGCATTGAATAAGGTGTCTTCAACATGCTGTATAACACTTTTTGC
TTCACCCGGTTCCATGTTCCCCCAGCAAAATAGCATTCAATAAATGTCTTGCCCAGAAGACGAG
GCAAAAAAATCTGTAGATCGCTTGCTTCAATATGAGAAACTGCAGCAAGTTTTTCATCCCATGC
CCAAGTTTGTTCCTCTAATATCAATGAACAATAGTAAAACCTTTATAACAGCAAAACGGTCAAC
CTTCACTTCAAACTCAGCAATTTTTCCAATGACAGTATCCAGAAGGGTTCTCATTTTGTCATTA
TAACCGACCATAGTTATCTGTAAGGAAATCATAAATATTGGACGTTTGCCCTTCAAACTTTTTT
GATTCCCAGAATATTCTCTAACATTATCTGGAGTCAAGTCATTTAATATATTCTGAATAGCATC
TGGAGAAAACTTTGATGGCACAGATGATGCAATCAGCCAATCTTCCGGCGGAAAGATCTCTGCA
TGTTTGAGGAAATATTGACAACATAATGGATAGGAGGACTCTTGTCTCGGTAGTGGAATCCCAT
CTCAGAAATAGCTACAAGCTATAATGTCCTCCATGTGCTCCATAGCCTACATCTGTGAGCTGTA
TAACAACATTGAAGAATGAAAACTCATAACTCCAGTCACCTTCCCATGCATACAAACTCATAGC
CCATCCTGAGGAATTTAACAAAGACAAAGTTAAAAACAACTTCCAGTATTCCTGACATCAGAGA
ACTTATTTTCAACAAGATTTTGAAGGTTGTCAAGACTCTCTCTTTGCCATACACAACAAGTTGC
ATCAAATTAGCTGAGTAATGTGAATTATAAAATTTAATAAGCTCTTCCAGTGTGTCCAATCCTT
CCTTATTTGGATTAACCAGCAAAGTGTCCTCGGGATCGCAGAAGTAGCCCACCGAGACATTCAT
CGACGCCGCCGCCTCCTTGTCGGTGTCGGGGTCGCTGACGAGGAGGCACTCGAGGGCGTTGGGG
AGCACGACGCGGCGGTACCCGCGCTTGTCGTTGCGGGGCCTGGTGATCTCCGCGTCGCCCTCCG
CCGCCGCGTGGCTCATCGTGGACTATCTTTTCGTACTCCGAGGAATGGAGACCGCCGTAAACTT
GAATACTGAGTATCTTCTTTTGTGGTGCATTAACTTTGACATGATTGTTGAAGAACTCTATCAA
CTCCTCTTTCTTAAGATCCCTCAGTGCAGCAACCTACCTCCACTTCTTTTCGATCAAATTTCAG
AGTTCCTTCCCTGAATATAATGCAGAAGGCAAGAATTTTCATCCTGGTGATTTAGGCATAATGC
TGGATAATAATACCTCAAACCCCTTTCAAGCTTTACAAGATGCTGTGATGAGGGTAATGCTTTG
CACAGACTGACAGGTGCATTGAATAAGATGTCTTCAACATGCTGCATAACACCTTTTACCGCAC
CCGGTTCCATGTTCCCTAATATCGACCAGCAAAGTAGCTCTCAATAAATGTTTTCCCCAGCAGA
TGAGGCAAAAACTTCTCGAGATCGCTAGCTTCAATTTGAGATACTGCAGCAAGTTCTTCATCCC
ATGCCCACGTTTGCCGAAATTTGAAATTCTCATACTCCTTTGTTATAGTTTCCTCCTTTATCAC
AGAAAAACGGTCAGCCTTAACTTCAAACTCAGCAATTTTCCCAATAACAGTCTCCAAAAGAGTT
CTCATTTTGTCATTGTAGCCCATAATCATTTAAATAATCCATGAGCAACCTTGTGAATACATCA
GTAAGAACTGATGATTCAGGAGAACTACGGGACAGTGGACAGTGGAAATCCATCTTGATATAGG
CCTTGGGTGTGAAGAACATTGTATCAGGTTTATACCACACTCTGGAAAACAGTGTTTTCCTCAA
CATACAAGGAAAACTTGCTTAATATACCCTGAATAGCATCTGGGGAAAATTTTGATGGCACGGA
CGATGCAATCAGCCAATCTTCCGGCGGATAGATCTGCTGCATGTTTGAGGAAATATTGGCAACA
TAATGGATAGGAGGACCCTTGCTTATTTTCAACAAGAGTTTGAAGATTGTCAAGACTCTCTCTT
TCCCATACACAACAAGCTGCATCAAGTTGGCTGAGTAGTGTGAATCATAAAATTTAATAAGCTC
AAGCCTTGTGTCCAATCCTTTCTCCTTTGGTTTAACCTCCAAAGTGCGCGAGCCCCTCGAGCCC
CTCGGGATCGCAGAAGTAGCCCACCGAGACGTTCATCGACGCCGCCGCCTCCTTGTCGGTGTCG
GGGTCGCTGACGAGGAGGCACTCGAGGTCGTTGGGGAGCACGACGCGGCGGTACCCGCGCTTGT
CGTTGCGTGGCCGGCCGTAGACTTGTATACTGAGTATCTTCTTTCGTGGTGCATTAACTTTGAC
ATGATTATCGAAGAACTCAATCAGCTCCTCTTTCTTGAGATCCCTCAGTGCAGCAACCTACCTC
CGCCTCTTTTCTATCAAATTTCAGAGTTCCTTCAGATGTTATGTAGCCAAGTTGTTCAACTGAA
CGTAATTGGTGAAAGGCTGGTTGCTTAGCAACAAGGGCAAGCAACTGAAGTAGAACATTTTGTT
TGAGGTCATCCTGATGAAT
						
					

						Genomic sequence
						
							TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.						
					

			
		

Sequences
Splice junction sequence	CAAGTTGTTCAACTGAACGTAATTGGTGAAAGGCTGGTTGCTTAGCAACAAGGGCAAGCAACTG AAGTAGAACATTTTGTTTGAGGTCATCCTGATGAATctgaatataatgcaggatggaagaattt ttttcatcctggtgatttaggcacaatgctggataataatacctccaacccctttcaagtttta caattcgc
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 2771 Transcript exons: 22940581-22940793,22940895-22941040,22941506-22941637,22 944088-22944125,22945027-22945132,22946863-22946951,2294 7679-22947698,22947976-22948103,22949528-22949592,229496 92-22949807,22954425-22954473,22954581-22954700,22955955 -22956111,22956181-22956219,22957055-22957144,22957157-2 2957273,22957568-22957684,22957733-22957772,22959783-229 59876,22961204-22961393,22962721-22962802,22963818-22963 866,22966440-22966479,22966568-22966680,22972161-2297222 8,22972345-22972433,22975808-22975919,22975986-22976025, 22976531-22976642 CTGAATATAATGCAGGATGGAAGAATTTTTTTCATCCTGGTGATTTAGGCACAATGCTGGATAA TAATACCTCCAACCCCTTTCAAGTTTTACAATTCGCTTTGTAAGATGCTGTGATGGGGGTAATG CTTTGCAGAAACTGATGGGTGCATTGAATAAGGTGTCTTCAACATGCTGTATAACACTTTTTGC TTCACCCGGTTCCATGTTCCCCCAGCAAAATAGCATTCAATAAATGTCTTGCCCAGAAGACGAG GCAAAAAAATCTGTAGATCGCTTGCTTCAATATGAGAAACTGCAGCAAGTTTTTCATCCCATGC CCAAGTTTGTTCCTCTAATATCAATGAACAATAGTAAAACCTTTATAACAGCAAAACGGTCAAC CTTCACTTCAAACTCAGCAATTTTTCCAATGACAGTATCCAGAAGGGTTCTCATTTTGTCATTA TAACCGACCATAGTTATCTGTAAGGAAATCATAAATATTGGACGTTTGCCCTTCAAACTTTTTT GATTCCCAGAATATTCTCTAACATTATCTGGAGTCAAGTCATTTAATATATTCTGAATAGCATC TGGAGAAAACTTTGATGGCACAGATGATGCAATCAGCCAATCTTCCGGCGGAAAGATCTCTGCA TGTTTGAGGAAATATTGACAACATAATGGATAGGAGGACTCTTGTCTCGGTAGTGGAATCCCAT CTCAGAAATAGCTACAAGCTATAATGTCCTCCATGTGCTCCATAGCCTACATCTGTGAGCTGTA TAACAACATTGAAGAATGAAAACTCATAACTCCAGTCACCTTCCCATGCATACAAACTCATAGC CCATCCTGAGGAATTTAACAAAGACAAAGTTAAAAACAACTTCCAGTATTCCTGACATCAGAGA ACTTATTTTCAACAAGATTTTGAAGGTTGTCAAGACTCTCTCTTTGCCATACACAACAAGTTGC ATCAAATTAGCTGAGTAATGTGAATTATAAAATTTAATAAGCTCTTCCAGTGTGTCCAATCCTT CCTTATTTGGATTAACCAGCAAAGTGTCCTCGGGATCGCAGAAGTAGCCCACCGAGACATTCAT CGACGCCGCCGCCTCCTTGTCGGTGTCGGGGTCGCTGACGAGGAGGCACTCGAGGGCGTTGGGG AGCACGACGCGGCGGTACCCGCGCTTGTCGTTGCGGGGCCTGGTGATCTCCGCGTCGCCCTCCG CCGCCGCGTGGCTCATCGTGGACTATCTTTTCGTACTCCGAGGAATGGAGACCGCCGTAAACTT GAATACTGAGTATCTTCTTTTGTGGTGCATTAACTTTGACATGATTGTTGAAGAACTCTATCAA CTCCTCTTTCTTAAGATCCCTCAGTGCAGCAACCTACCTCCACTTCTTTTCGATCAAATTTCAG AGTTCCTTCCCTGAATATAATGCAGAAGGCAAGAATTTTCATCCTGGTGATTTAGGCATAATGC TGGATAATAATACCTCAAACCCCTTTCAAGCTTTACAAGATGCTGTGATGAGGGTAATGCTTTG CACAGACTGACAGGTGCATTGAATAAGATGTCTTCAACATGCTGCATAACACCTTTTACCGCAC CCGGTTCCATGTTCCCTAATATCGACCAGCAAAGTAGCTCTCAATAAATGTTTTCCCCAGCAGA TGAGGCAAAAACTTCTCGAGATCGCTAGCTTCAATTTGAGATACTGCAGCAAGTTCTTCATCCC ATGCCCACGTTTGCCGAAATTTGAAATTCTCATACTCCTTTGTTATAGTTTCCTCCTTTATCAC AGAAAAACGGTCAGCCTTAACTTCAAACTCAGCAATTTTCCCAATAACAGTCTCCAAAAGAGTT CTCATTTTGTCATTGTAGCCCATAATCATTTAAATAATCCATGAGCAACCTTGTGAATACATCA GTAAGAACTGATGATTCAGGAGAACTACGGGACAGTGGACAGTGGAAATCCATCTTGATATAGG CCTTGGGTGTGAAGAACATTGTATCAGGTTTATACCACACTCTGGAAAACAGTGTTTTCCTCAA CATACAAGGAAAACTTGCTTAATATACCCTGAATAGCATCTGGGGAAAATTTTGATGGCACGGA CGATGCAATCAGCCAATCTTCCGGCGGATAGATCTGCTGCATGTTTGAGGAAATATTGGCAACA TAATGGATAGGAGGACCCTTGCTTATTTTCAACAAGAGTTTGAAGATTGTCAAGACTCTCTCTT TCCCATACACAACAAGCTGCATCAAGTTGGCTGAGTAGTGTGAATCATAAAATTTAATAAGCTC AAGCCTTGTGTCCAATCCTTTCTCCTTTGGTTTAACCTCCAAAGTGCGCGAGCCCCTCGAGCCC CTCGGGATCGCAGAAGTAGCCCACCGAGACGTTCATCGACGCCGCCGCCTCCTTGTCGGTGTCG GGGTCGCTGACGAGGAGGCACTCGAGGTCGTTGGGGAGCACGACGCGGCGGTACCCGCGCTTGT CGTTGCGTGGCCGGCCGTAGACTTGTATACTGAGTATCTTCTTTCGTGGTGCATTAACTTTGAC ATGATTATCGAAGAACTCAATCAGCTCCTCTTTCTTGAGATCCCTCAGTGCAGCAACCTACCTC CGCCTCTTTTCTATCAAATTTCAGAGTTCCTTCAGATGTTATGTAGCCAAGTTGTTCAACTGAA CGTAATTGGTGAAAGGCTGGTTGCTTAGCAACAAGGGCAAGCAACTGAAGTAGAACATTTTGTT TGAGGTCATCCTGATGAAT
Genomic sequence	TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_007273* 						
					
						PMCS
						0.697769912

Conservation Information
Conserved circRNAs	osi_circ_007273*
PMCS	0.697769912

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							osa-miR2871b-3p osa-miR5499 osa-miR2275c 						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	osa-miR2871b-3p osa-miR5499 osa-miR2275c
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ye et al., 2015

circRNA

Detail information of Os07g0570100_circ_ag.5

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