Detail information of Os07g0570300_circ_g.5


General Information
CircRNA Name Os07g0570300_circ_g.5
ID in PlantcircBase osa_circ_034422
Alias NA
Organism Oryza sativa
Position chr7: 22959784-22962799  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os07g0570300
Parent gene annotation Peptidase M16, core domain containing protein. (Os07t0570300-01)
Parent gene strand -
Alternative splicing Os07g0570100_circ_ag.1 Os07g0570100_circ_ag.2 Os07g0570100_circ_ag.3 Os07g0570100_circ_ag.4 Os07g0570100_circ_ag.5 Os07g0570100_circ_ag.6 Os07g0570100_circ_ag.7 Os07g0570100_circ_g.1 Os07g0570100_circ_ag.2 Os07g0570100_circ_g.3 Os07g0570100_circ_ag.4 Os07g0570100_circ_g.5 Os07g0570100_circ_ag.6 Os07g0570100_circ_ag.7 Os07g0570100_circ_ag.8 Os07g0570100_circ_ag.9 Os07g0570100_circ_ag.10 Os07g0570100_circ_ag.11 Os07g0570100_circ_ag.12 Os07g0570100_circ_ag.13 Os07g0570300_circ_ag.1 Os07g0570300_circ_g.1 Os07g0570300_circ_g.2 Os07g0570300_circ_ag.3 Os07g0570300_circ_g.4 Os07g0570300_circ_g.6 Os07g0570300_circ_ag.7 Os07g0570300_circ_g.8 Os07g0570300_circ_g.9 Os07g0570300_circ_ag.10 Os07g0570300_circ_ag.11 Os07g0570300_circ_g.12 Os07g0570300_circ_ag.13 Os07g0570300_circ_ag.14 Os07g0570300_circ_g.15 Os07g0570300_circ_ag.16 Os07g0570300_circ_ag.17 Os07g0570500_circ_g.1 Os07g0570500_circ_g.2 Os07g0570500_circ_g.3 Os07g0570500_circ_g.4 Os07g0570500_circ_g.5 Os07g0570500_circ_g.6
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os07t0570300-01:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CATTATCAGGAGTCAACTCATTTAATATACCCTGAATAGCATCTGGGGAAAATTTTGATGGCAC
GGACGATGCAATCAGCCAATCTTCCGGCGGATAGATctttatcacagaaaaacggtcagcctta
acttcaaactcagcaattttcccaataacagtctccaaaagagttctcattttgtcattgtagc
caaccatg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTTATCACAGAAAAACGGTCAGCCTTAACTTCAAACTCAGCAATTTTCCCAATAACAGTCTCC
AAAAGAGTTCTCATTTTGTCATTGTAGCCAACCATGGTTATCTGTAAGGCAATCATAAATATTG
GAGTATTAGAAAAGAAGAGGATTTTAGTAAGACACGTAACATGCCATGGGGTCTAACTTCTGGA
GAAGGAATAATATCAACATCACAAAACATGCATGATGAAAAATCAGGGTTATGCAATATTGACC
ATTTAATCTAATAGAGAGTATAGTACCATTTGTAATCCACAAATAAGAAAAAAAGAAAACAAAT
GGAGATAAAAGGCCCTGTTCTATTCTTCAACTTTCTCGTTTTCTGTTAGCACGTTTTTCAAATT
GTTAAATGGTATGTTATTTTAAAAAATTTTCTATAAAGAAGTTGTTTAAAAAAGCAAATAAATC
CTTTTTTCAGATTTATAATAGTTAATACTTAATTAATCATGTGCTAATGAGGTTTCTCGTTTTG
CGTGCCATAAAAATCTATCTCCAAAACTGGAGATCGAACGGGGCCAGATGTAGCAACTTATGAA
AAGATTAGATCATGTACATCTTATAAATTAAGATCATGTAGTAATGAAGTATTTACAAACCACT
CTCAGTACTTAACTACATCTAGTTAAAAAAATGCACATCTATTACTATCTCCCTACATATTGCT
TCCTTGAACATGCATGAGATATTATTGAAGTGTAATTCCATTGAATTATATCTAAATTGGGTTT
TTGAGCGTCAAGCCAGTAAATACTAATTTGATGCACATCGTTTGGTCGAAAAATGGCACGTATT
CAAAAAGGAGTAGCTTAGTATCAGTGGAACAATTCAATTTCCACATTAACCAGAAAATTCCTTT
TTTGAACCCCCAGGAATTTCATAAAATTTTCACATGGAACACTTCAACTCCCTCAGGAATCAGA
AAAGGAATGTGCTTATCATTATCAACAGAAGCCCCTCCCCCCGGCGGGATTAACAATGAAGATA
AACAATTGTTATTTCACGTGAACTGCACAGCTGACCTGAAAACCAGTGTCATTTGGCCTAACAC
CGTAATAAAGACCAGCAACTTGAGCATCATAAGCTGAAAGCAAAACAAAGCTGTTGGATTATGG
CAATGGGTAAATCAATCAAAAGGTAACTTAACAAGGAGATGACAACGACAATGTGTTTAACCCC
TCGTTTTTCTAGGATGAGTAGTGTATGTTCAGGACGGTGATTTGTTTTAGGCAAACAGAAATTA
AGGCTCTCAAGCAGAAAAGAACCTTTTCCAACTTCATCATTAATCTTACCTCCTTTAATATATC
CCCTCTAGACTATATGTCTATCGTCAGATCATCGTACAAAGACAAGTTTAAAATACACTCAAAT
TTTACTACATACCATAATCATTTAAATAATCCATGAGCAACCTTGTGAATACATCAGTAAGAAC
TGATGATTCAGGAGAACTACGGGACAGTGGACAGTGGAAATCCATCTTGATATAGGCCTTGGGT
GTGAAGAACATTGTATCAGGTTTATACCACACTCTGGAAAACAGTGTTTTCCTCAACATACAAG
GAAAACTTGCCTGGATAAACCAAAAGGTATCAACAAACAGTTTATAAAAACATAATTATGACTT
TTTTAAGGTGGTAAAAACCTTCTCCTCGGCATTTTTCAATGAAAGATCACTTGGAAGGAAGATA
TTAGGTTTTGGCATGTGCAAATCTTCCACGGGAGCTTTCTCTACCCATTTCTGCACAAATTTAT
ACAAGGAACTTTTATGTTTCCAAATATAGAAATTGGATAATATAACAAGAACAGTAACATCCAA
ATGTATACCTGTATAATGGATGGAGGAACTGCTTCCACAGAATATGATGTACCATACCACGGCT
CTGTTAAGTTTGTTTGCCCTTCAAATTTTTTGGACTCCCAGAATATCCTGAAATGAGATGTGGA
CGATAAGTATATGATGCCCACAGTAAAAAAAAAAAAAAAGGTAGAGTGGGAAAAAAATAGCTAA
TTTAAGGAATATATAGAGTGTGAAAGGAGAAGAGAAAGCACATGACCATTAAAAAAAAAACTAA
TGAAAGGAACAGATTGGTTTTTGAAATTTGACAAAAAAAAGGGGGGGGGGCAATGTAAGCAAAG
AAATTTCTTTCACCTTCTTTGACGAAGAAATAATAAAATTTCTGGCAAGCAAAAGTTATCTTCG
TTTTTTGACATGAAACAGCAGGAGCATATATATATACACACACACACACATATTAAATATATGA
AAGTTCTCTTCGTTAGATCAGTTTTCTAGAAGTATTACAAATTTAAGTCAACAAGAACAATGAA
TCTGGTATCGCAGAGTGATCGAAGAGCAACACTAAAAGCATATACAGTATTCTGTTACTGCTGA
GATAACCAATCAAATCACAGTGACTAGTCTGCATTACTGTATGAGAACGTTATATGCATAAGAT
CATTATCATTAAAAGAATACACTTTTGTTTTGTAAGTTGAACGGAAAATTTCTGTTTGAGATTG
TGTGCAATAGATGTGCTGGCCTGTGCACTCGATAAGCCCTAAGAAACATCCTTACTGTTCAGGA
AGAGAAGAAGTGAAGATTTTGCAATGCAGTAAATGGACCGTTCAAATCATCAAACATATGTGGC
ACAATGAATTACGATAATGATGAATTTCCTAAGAAAAATAAATTCAGAGTACTCAAGAGAAGAA
AAATAAGTAGATTATAACTGGATTTAAGTATGGCAAATATGTGTTCAGATAACATATGCTGAAC
ATTAAGTATAATATTCAGTAACTGGTGTTTTGAATCTTAAACATAACCAGGAGAACCTGATATG
GGCAATATGGCATGGTCGCACTCAGAACCTACCTAACATTATCAGGAGTCAACTCATTTAATAT
ACCCTGAATAGCATCTGGGGAAAATTTTGATGGCACGGACGATGCAATCAGCCAATCTTCCGGC
GGATAGAT
Conservation Information
Conserved circRNAs NA
PMCS 0.222148793
Functional Information
Coding potential Y
Potential coding position 22962758-22959809(+)
22961527-22959786(-)
Potential amino acid sequence MARTMQSANLPADRSLSQKNGQP*(+)
MPKPNIFLPSDLSLKNAEEKASFPCMLRKTLFSRVWYKPDTMFFTPKAYIKMDFHCPLSRSSPE
SSVLTDVFTRLLMDYLNDYAYDAQVAGLYYGVRPNDTGFQITMVGYNDKMRTLLETVIGKIAEF
EVKADRFSVIKIYPPEDWLIASSVPSKFSPDAIQGILNELTPDNVRIFWESKKFEGQTNLTEPW
YGTSYSVEAVPPSIIQKWVEKAPVEDLHMPKPNIFLPSDLSLKNAEEKASFPCMLRKTLFSRVW
YKPDTMFFTPKAYIKMDFHCPLSRSSPESSVLTDVFTRLLMDYLNDYAYDAQVAGLYYGVRPND
TGFQITMVGYNDKMRTLLETVIGKIAEFEVKADRFSVIKIYPPEDWLIASSVPSKFSPDAIQGI
LNELTPDNVRIFWESKKFEGQTNLTEPWYGTSYSVEAVPPSIIQKWVEKAPVEDLHMPKPNIFL
PSDLSLKNAEEKASFPCMLRKTLFSRVWYKPDTMFFTPKAYIKMDFHCPLSRSSPESSVLTDVF
TRLLMDYLNDYAYDAQVAGLYYGVRPNDTGFQITMVGYNDKMRTLLETVIGKIAEFEVKADRFS
VIKIYPPEDWLIASSVPSKFSPDAIQGILNELTPDNVRIFWESKKFEGQTNLTEPWYGTSYSVE
AVPPSIIQKWVEKAPVEDLHMPKPNIFLPSDLSLKNAEEKASFPCMLRKTLFSRVWYKPDTMFF
TPKAYIKMDFHCPLSRSSPESSVLTDVFTRLLMDYLNDYAYDAQVAGLYYGVRPNDTGFQITMV
GYNDKMRTLLETVIGKIAEFEVKADRFSVIK(-)
Sponge-miRNAs osa-miR5499
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017