Detail information of Os11g0461000_circ_g.3


General Information
CircRNA Name Os11g0461000_circ_g.3
ID in PlantcircBase osa_circ_009313
Alias NA
Organism Oryza sativa
Position chr11: 15721114-15722355  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, KNIFE, PcircRNA_finder
Parent gene Os11g0461000
Parent gene annotation Peptidase S10, serine carboxypeptidase family protein. (Os11t046
1000-01);Hypothetical conserved gene. (Os11t0461000-02);Peptidas
e S10, serine carboxypeptidase family protein. (Os11t0461000-03)
Parent gene strand +
Alternative splicing Os11g0461000_circ_igg.1 Os11g0461000_circ_igg.2 Os11g0461000_circ_igg.3 Os11g0461000_circ_g.1 Os11g0461000_circ_g.2 Os11g0461000_circ_g.4 Os11g0461000_circ_g.5 Os11g0461000_circ_g.6 Os11g0461000_circ_g.7 Os11g0461000_circ_g.8
Support reads 3
Tissues shoot, root, seed
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os11t0461000-01:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTACGTTGCTGGCAATCCAAGGACCGAACGCCAATTTGATGAAGGTGGTAAAATTCCATTTCTC
CATGGCATGGGACTTATATCCAATGAACTTTATGAGtggcttcatgatcatccccagttcttgc
tgaatccgctgtatattggaggtgactcatatagtggttatattgtacctacacttgcgctagc
gattgatg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 220
Transcript exons: 15721114-15721172,15722195-15722355
TGGCTTCATGATCATCCCCAGTTCTTGCTGAATCCGCTGTATATTGGAGGTGACTCATAGTGGC
CTGCAATTAACTTTTGCCTTCCACCAATTTCTTTACCTTGTGTACATGACGCAGGGGTACGTTG
CTGGCAATCCAAGGACCGAACGCCAATTTGATGAAGGTGGTAAAATTCCATTTCTCCATGGCAT
GGGACTTATATCCAATGAACTTTATGAG

Transcript length: 222
Transcript exons: 15721114-15721206,15722227-15722355
TGGCTTCATGATCATCCCCAGTTCTTGCTGAATCCGCTGTATATTGGAGGTGACTCATATAGTG
GTTATATTGTACCTACACTTGCGCTAGCGTTTCTTTACCTTGTGTACATGACGCAGGGGTACGT
TGCTGGCAATCCAAGGACCGAACGCCAATTTGATGAAGGTGGTAAAATTCCATTTCTCCATGGC
ATGGGACTTATATCCAATGAACTTTATGAG

Transcript length: 243
Transcript exons: 15721114-15721216,15722052-15722089,15722254-15722355
TGGCTTCATGATCATCCCCAGTTCTTGCTGAATCCGCTGTATATTGGAGGTGACTCATATAGTG
GTTATATTGTACCTACACTTGCGCTAGCGATTGATGAAAGCAATGATTCAGGAGATAAACCAAT
TTTGAATCTCATGGGGTACGTTGCTGGCAATCCAAGGACCGAACGCCAATTTGATGAAGGTGGT
AAAATTCCATTTCTCCATGGCATGGGACTTATATCCAATGAACTTTATGAG

Transcript length: 279
Transcript exons: 15721114-15721200,15722164-15722355
TGGCTTCATGATCATCCCCAGTTCTTGCTGAATCCGCTGTATATTGGAGGTGACTCATATAGTG
GTTATATTGTACCTACACTTGCGCATAAATTGCTTGCTAATGTGTAGTACCAATGTGGCCTGCA
ATTAACTTTTGCCTTCCACCAATTTCTTTACCTTGTGTACATGACGCAGGGGTACGTTGCTGGC
AATCCAAGGACCGAACGCCAATTTGATGAAGGTGGTAAAATTCCATTTCTCCATGGCATGGGAC
TTATATCCAATGAACTTTATGAG

Genomic sequence TGGCTTCATGATCATCCCCAGTTCTTGCTGAATCCGCTGTATATTGGAGGTGACTCATATAGTG
GTTATATTGTACCTACACTTGCGCTAGCGATTGATGAAAGTAAGCTTCTTGCATTGTGAATGGA
TAATTTCCTTAGACATCCTCACAGTGTTACACAACATTAAATTTGATCACCTTGCAGTTTCGGA
ATATATTTCAGTAAATAATACCATCTCTCATATGGGTAATGGTGATCACCATATATCAATTACT
ATCACAACAATTACTAGTAAGATTTTTCTTTTGTTACTAACTAAATACTATTGTTTTGGCAATC
ATCTAAATGAGAGAAATCCTTATATGCCACTCAAAATTAGCTCGTTCTCTTATATGCCACTCAA
AATTAGCTCTTTCCATCTATGCCATTGGTTCGAATTTATCCTCTTTTTTGCCACTACCATCACT
CCATCGTCTATTCACAATTAATTCCATTGTAGAAAGATGCAGTTGCCCTTGAAAGTTGCTATAG
AACAAGTTGGTTGTGACCGTGACGAAGTTTCAGCGAGGTCCTGCTTTTTTCCTAGTTTGGCAAC
TTTTGTTTGATGGATCCAGCATTGTTAGAGGGCAATATTGGATTTTAGGCAGAAGATGCACAAG
GAAACGAAAAAGAGGAATTAAACTATGGACAGATAATGGAGTGGTGGTAACAGCACAAGAGGGT
CGAGAAATTTAAACCAGTGGCATAGATGGAAAGAGCTAATTTCGAATGGTATATAAGAGAATGA
GCCAATTTCAAGTGATATATATGGAATTCTCTCCATCTAAATATTAGGACTGAGATATATATTT
TTTATTCATGAATTATTAAAACAAATTTGTTGTTCATTTTCTGCGTGGATTAATATTGTGTGTG
TTTCCAACTACTAACTACGGACCATGTGTCTATATTTTTCAGGCAATGATTCAGGAGATAAACC
AATTTTGAATCTCATGGTCTGATCGATCTTATCAGATAAATATCAATCATGAAATTTTATATTT
GGAATCTTAATTACGTCAATAGTCTACATAAATTGCTTGCTAATGTGTAGTACCAATGTGGCCT
GCAATTAACTTTTGCCTTCCACCAATTTCTTTACCTTGTGTACATGACGCAGGGGTACGTTGCT
GGCAATCCAAGGACCGAACGCCAATTTGATGAAGGTGGTAAAATTCCATTTCTCCATGGCATGG
GACTTATATCCAATGAACTTTATGAG
Conservation Information
Conserved circRNAs osi_circ_008999
PMCS 0.228463795
Functional Information
Coding potential Y
Potential coding position 15722088-15722352(+)
15722295-15721141(+)
15721130-15722062(-)
15721173-15722335(-)
Potential amino acid sequence MGYVAGNPRTERQFDEGGKIPFLHGMGLISNELYEWLHDHPQFLLNPLYIGGDSYSGYIVPTLA
LAIDESNDSGDKPILNLMGYVAGNPRTERQFDEGGKIPFLHGMGLISNELYEWLHDHPQFLLNP
LYIGGDSYSGYIVPTLALAIDESNDSGDKPILNLMGYVAGNPRTERQFDEGGKIPFLHGMGLIS
NELYEWLHDHPQFLLNPLYIGGDSYSGYIVPTLALAIDESNDSGDKPILNLMGYVAGNPRTERQ
FDEGGKIPFLHGMGLISNELYE(+)
MKVVKFHFSMAWDLYPMNFMSGFMIIPSSC*(+)
MIMKPLIKFIGYKSHAMEKWNFTTFIKLAFGPWIASNVPHEIQNWFIS*(-)
MSHLQYTADSARTGDDHEATHKVHWI*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017