Detail information of BGIOSGA035227_circ_ig.1


General Information
CircRNA Name BGIOSGA035227_circ_ig.1
ID in PlantcircBase osi_circ_008999
Alias Chr11:17447669_17448902(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr11: 12091906-12093139  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ig-circRNA
Identification method CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA035226_circ_ig.1 BGIOSGA035227_circ_g.1 BGIOSGA035227_circ_igg.1
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   GT-CA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTACGTTGCTGGCAATCCAAGGACCGAACGCCAATTTGATGAAGGTGGTAAAATTCCATTTCTC
CATGGCATGGGACTTATATCCAATGAACTTTATGAGgtggcttcatgatcatccccagttcttg
ctgaatccgctgtatattggaggtgactcatatagtggttatattgtacctacacttgcactag
cgattgat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTGGCTTCATGATCATCCCCAGTTCTTGCTGAATCCGCTGTATATTGGAGGTGACTCATATAGT
GGTTATATTGTACCTACACTTGCACTAGCGATTGATGAAAGTAAGCTTCTTGCATTGTGAATGG
ATAATTTCCTTAGACATCCTCACAGTGTTACACAACATTAAATTTGATCACCTTGCAGTTTCGG
AATATATTTCAGTAAATAATACCATCTCTCATATGGGTAATGGAGATCACCATATATCAATTAC
TATCACAACAATTACTAGTAAGATTTTTCTTTTGTTACTAACTAAATACTATTGTTTTGGCAAT
CATCTAAATGAGAGAAATCCTTATATGCCACTCAAAATTAGCTCGTTCTCTTATATGCCACTCA
AAATTAGCTCTTTCCATCTGTGCCATTGGCTCGAATTTATCCTCTTTTTTGCCACTACCATCAC
TCCATCGTCTATTCACAATTAATTCCATTGTAGAAAGATGCAGTTGCCCTTGGAAGTTGCTATA
GAACAAGTTGGTTGTGACCGTGACGAAGTTTCAGCGAGGTCCTGCTTTTTTCCTAGTTTGGCAA
CTTTTGTTTGATGGATCCAGCATTGTTAGAGGGCAATATTGGATTTTAGGCAGAAGATGTACAA
GGAAACGAAAAAGAGGAATTAAACTATGGACAGATAATGGAGTGATGGTAACAGCACAAGAGGG
TTGAGAAATTTAAACCAGTGGCAGAGCTAATTTCGAATGGTATATAAGAGAATGAGCCAATTTC
AAGTGATATATATGGAATTCTCTCCATCTAAATATTAGGACTGAGATATATATTTTTTATTCAA
GAGTTATTAAAATAAATTTGCTGTTCATTTTCTGCGTGGATTAATATTGTGTGTGTGTTCCAAC
TACTAACTACGGACCATGTGTCTATATTTTTCAGGCAATGATTCAGGAGATAAACCAATTTTGA
ATCTCATGGTCTGATCGATCTTATCAGATAAATATCAATCATGAAATTTTATATTTGGAATCTT
AATTACGTCAATAGTCTACATAAATTGCTTGCTAATGTGTAGTACCAATGTGGCCTGCAATTAA
CTTTTGCCTTCCACCAATTTCTTTACCTTGTCTACATGACGCAGGGGTACGTTGCTGGCAATCC
AAGGACCGAACGCCAATTTGATGAAGGTGGTAAAATTCCATTTCTCCATGGCATGGGACTTATA
TCCAATGAACTTTATGAG
Conservation Information
Conserved circRNAs osa_circ_009313
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021