Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os11g0461000_circ_g.5 |
ID in PlantcircBase | osa_circ_009315 |
Alias | NA |
Organism | Oryza sativa |
Position | chr11: 15722254-15737633 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os11g0461000 |
Parent gene annotation |
Peptidase S10, serine carboxypeptidase family protein. (Os11t046 1000-01);Hypothetical conserved gene. (Os11t0461000-02);Peptidas e S10, serine carboxypeptidase family protein. (Os11t0461000-03) |
Parent gene strand | + |
Alternative splicing | Os11g0461000_circ_igg.1 Os11g0461000_circ_igg.2 Os11g0461000_circ_igg.3 Os11g0461000_circ_g.1 Os11g0461000_circ_g.2 Os11g0461000_circ_g.3 Os11g0461000_circ_g.4 Os11g0461000_circ_g.6 Os11g0461000_circ_g.7 Os11g0461000_circ_g.8 |
Support reads | 1 |
Tissues | shoot |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Os11t0461000-01:7 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.092456818 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
15722327-15737630(+) 15734709-15736098(-) 15722329-15737599(-) 15722316-15737589(-) |
Potential amino acid sequence |
MGLISNELYEHAKETCRGKYNAPGNARCEQSMKVIHDCTKDINMLHVLEPFCEDVGSPGIHNNE ATDGMIRLMLESASAANDDIIEFKCRKASYVVLQIWANDKTVRESLGVHKGTVGEWIRCNFDVD YIADVYSTVEYHLTLMRKGYRALIYSGDHDCQVPFTGTQAWIRFLNLSVIDDWRPWYAAGQVAG FTRSYANNNLIYATVKGYVAGNPRTERQFDEGGKIPFLHGMGLISNELYEHAKETCRGKYNAPG NARCEQSMKVIHDCTKDINMLHVLEPFCEDVGSPGIHNNEATDGMIRLMLESASAANDDIIEFK CRKASYVVLQIWANDKTVRESLGVHKGTVGEWIRCNFDVDYIADVYSTVEYHLTLMRKGYRALI YSGDHDCQVPFTGTQAWIRFLNLSVIDDWRPWYAAGQVAGFTRSYANNNLIYATVKGYVAGNPR TERQFDEGGKIPFLHGMGLISNELYEHAKETCRGKYNAPGNARCEQSMKVIHDCTKDINMLHVL EPFCEDVGSPGIHNNEATDGMIRLMLESASAANDDIIEFKCRKASYVVLQIWANDKTVRESLGV HKGTVGEWIRCNFDVDYIADVYSTVEYHLTLMRKGYRALIYSGDHDCQVPFTGTQAWIRFLNLS VIDDWRPWYAAGQVAGFTRSYANNNLIYATVKGYVAGNPRTERQFDEGGKIPFLHGMGLISNEL YEHAKETCRGKYNAPGNARCEQSMKVIHDCTKDINMLHVLEPFCEDVGSPGIHNNEATDGMIRL MLESASAANDDIIEFKCRKASYVVLQIWANDKTVRESLGVHKGTVGEWIRCNFDVDYIADVYST VEYHLTLMRKGYRALIYSGDHDCQVPFTGTQAWIRFLNLSVIDDWRPWYAAGQVAGFTRSYANN NLIYATVK(+) MLIKFIGYKSHAMEKWNFTTFIKLAFGPWIASNVPLHSCIYQVIIRIASRESGNLSSSIPWSPI INYRKVQKSNPCLCTSEGNLTIMITAVYQCSVSFSH*(-) MPWRNGILPPSSNWRSVLGLPATYPFTVAYIRLLFA*(-) MEFYHLHQIGVRSLDCQQRTPSQLHISGYYSHSFS*(-) |
Sponge-miRNAs | osa-miR2096-5p osa-miR2919 |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |