Detail information of POPTR_0016s03080_circ_ag.1


General Information
CircRNA Name POPTR_0016s03080_circ_ag.1
ID in PlantcircBase pop_circ_003822
Alias Chr16:1740401|1745145
Organism Populus trichocarpa
Position chr16: 1541392-1546186  JBrowse»
Reference genome Populus trichocarpa genome v3.0
Type   ag-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing POPTR_0016s03080_circ_ag.2 POPTR_0016s03080_circ_ag.3 POPTR_0016s03080_circ_ag.4
Support reads NA
Tissues stem cambium
Exon boundary   NA-NA
Splicing signals   CA-GA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTCCTCCGGCTTGACACCATCAGGGGTGGTCCAATGAAAATGGTGGAGCAGATGACCGATCATA
GACGTGACCAGATTGATGGCAAGCTGTGCACCAGGGcacacccttcttccagctccgaatggaa
gtagcctgaaatcatgacctctcatgtcgacatcctcctcaaagaacctctccggccggaactc
taaagggt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CACACCCTTCTTCCAGCTCCGAATGGAAGTAGCCTGAAATCATGACCTCTCATGTCGACATCCT
CCTCAAAGAACCTCTCCGGCCGGAACTCTAAAGGGTTCTTCCACAAAGCCGGATCACGAGCCAC
AGCCCATACGTTTACGTGAACAACTGATCCCTTAGGGATGTCATAGCCGCCGATTTTAACAGTA
GTATTGGCACGATGAGGTAGCATCAGTGGTGTTGGTGGGTGCAACCTCAGCGATTCCTTGACTA
CAGCTTGCAGGTAAGGGAGATTTGGGAAATCTGCTTCAGTCATGACACGTTCGAACCCAACCAC
TCGGTCTAGCTCATCTTGAGCCTTCTGTTGAACCCTTGGGTTCTTGATTAGCTCAGCCATTGCC
CACTCCACTGAGATTGCTGTTGTATCCATGCCAGCACTGATCATGTCCTGCACAAAATATTAGA
TACAAGTATAATTAAACCCTAATCAGTCATAGCCAGTCAACCAAAGATTCATTTGACAGCATAG
AGAAACTTCTATCCACCAAATTGTTTAAGATTTTAAGCGAAATGTGCATACATACCCATAGGAG
ACTAATAAATGTGACCTCACTGAGGTCATATTTTTCTTGCAGTGTTAGCAATGCATCAACAAAA
TGATTCTTGACCCCACCACTTTTCTTGCGTGCATTGTTATGTTCCTCCATGATAGATCTAACCA
GCCTGTCTCGACGAGCATTAAGCTTGGCAAAAGCCTCTTCCTCTAGTCGAACCATCCATTGAAG
CCATGGAATGTGCTCGGCCATGGAATGTGATGCACCAAGCCTAAATCCATCGGAAACAATTGCC
TTGAATTCTTGGCCTTGCTCATCAATTATCCCCTCTGAATTCATGAACCGCTTTCCAAATGCTA
GTCTTGTAATGTTATTCCAAGCCACATCTCCCAAATATTTCTTCACCAACAAGATTTTTCCATG
GTTTTCTGCAAGAGATAATTCATGATCTCAAGACCAGTCCTTTTAGACAATTTCGAATTAGGCA
CAACGACCATTAATCTGACAGGTTTTAGTGTGATAACTAGCTTTCTGACCCGCATTTTGTTGTC
AATTGAATTTTTTTTTTCTCAACAAAAAAAAAATAAATATTTAGGTTTTTCCAACATGTTTTTT
GACATATAAAAAAATCTTAATTGTAAATTAAAAAGTTAATGCATGCATTTAATTAAATAAATTA
AGAATCATCTATGCTATAAAAAAAACCAAAATGATTTGTTTATGATAACTAAAGACTAAAATGA
AAAACCAAAAAATTAATATAAATCAAGATATTTTATTTCAAAACAAAAATCATGTATCTAGTTG
ATTATTGATGAAGACTAATTATGGGATGGGATAGTATTTCTCACAACAAACATGATTTGCCAGA
TGAATCTTAAGATACAAGATTAAGAGGACGTCTACCTCAAATATATTTCTACCATCGTATGGGT
GTTCCTAATAGAAAGAAAGAAAGAAAAAACGTAAAGAACAGCTAAATTGCTAAAAATAGTACGT
TAAAAGTGTAAGAGAAATACTACTACATCACATACCTGGATTGGTGCAATCCTTGAAAATGGAT
TCTGCCATGAAAGAAACCTCATCTTCTCTAATAGGTCTGAGTTCCTCAAGTCTCTTTGCTGAGA
AGAGCTCAAGAGTAGACACTTTCCTAAGCTTCACGTAGTGAGGACCATAGTCAGCCCATATGAG
GTCCTCGCCACCTCTACTAAACCTGGCGAGAAATCTAGTCCTATGCCTATCAGCCAGCTGCTGG
TCATTCTCTTTGAGAACTTGCCTGGCCAGTTCCGCATTACACACAACTACATTCAAAGTTGAAC
CAAACCAAACTGAAACAATTGGTCCGTAAGCCTGAGCCCACTCTGCAAAACATCTGAACATAAT
AAGCTTGACATCATAGAGGTTCCCAACAATCGGCCACGGTCGTGGACCAGGCGGTAGCTTGAAC
CTCAGCCTCTGGTACAGAATGTATGCAAGAACGAGAACAAAGATCGAAACTAATACTAACAGAG
GCAGAGCCATATAGGAAAAAGAGAGATGAAGATAGGGCAAAGGTTAGTTTTTGAAGGTTCTAGC
CAAAGAAATGCCAGGAGAGATGTCTATATATATATATATATATATATATATATATATATATATA
TATATATATATATATATTTGAATAATGGTGTAGAATTGATGGATTTGAAAGTTTTTGTTAGAAA
CGTGCTTTATGTGAATATTACGAGTGAGTAATGGGCGTCATGCAAATGCAATGGCAATGGCAAT
TTTTCATCCAAATTGTCCGGATGATCACCTCCTTTAATTTTAATTTATTATCATCATAAATCGA
ATACTTTTTTTTTCATTTTACAAAAACAATAATTTAAAAGAAAATAAAAGCATGCGTGGAGGTA
TTATTGAGTATACATGAAATTATTAAACTAGCACAGCCCATGATCGATTCAAGGTATGACTGAT
GGGTTAATTAAACAGTTTAACTTGATTTGATATTTTTAATATTGTTTTAAAATAAATTAAAATA
ATATTATTTTAAAATAAAATCAGGTTTTAATGAGATGAAACAAGCTCATCAACATTCCATATAT
TTTAGAGAGATTAAATCTATTGACATGGAGATGAGCATTACTAAACTACTACCTTACCCTATTA
AATTCGAAGATAATATTCTTCCTTGACAAGTAAAAAAAAAAAAAATTCCTTATTCAGACCTTTA
AGATATTTTTATATTTTTTTTTTTTGCTTTTTTTTATTTTTATTTAAAAAAATTTAAAAGAAAA
AAGAAAACTTGTTTTGTATTTTTTATTTTATAACGTAAATGAGTTTAAATTTGTAGTTGGACAT
ATTTATCAGTAATTTACTAGATCTTTATGAACAATTTTATTATACGCTTTTTTAATAATTCTTA
TAACATGATCTTGAAGTAGGTTTCCTGTGTAGAAAGTATCACATGTATTTAACATAATCTCCGT
TGTTGAATCTCAACAACTAATTAACAAAAAATTATATGAGAAAAAAAAAATTATTGTACTTCTC
ATATAATATTATTTATTAAAATAATAATATTATTTTTTATTTTTCTTTCGATTTTAATCACATT
TTTTAACATTAGGTTTATTGAGGATTTAATTTCATGAATTTTTTAAATTTACTTCTTATGATGT
TATTATAAACACATGACCCGAACTACAGGTTTGATAGATTAACTCAAGTTTTTTTTATCTAATT
GACTTTTTTTTTTCTCAATGTCATCCTTTAACATTGGGTTGATTAGGAATTAAACTACGTAATT
TGTTTCGATTTGATTTTTATGAGGTTATCTTCATCTTATAACTCGGGTCACGGGTTTAGCGGGT
TAACCTTGGTTGACTGGAGTTGTTTTTTATGTTACTTTTTAATTATTTTTTTATTTCATATTTC
AACACTGGGTTAATTGAAAATTGAGCTTTATAATTTGTTTCAATTTTCTTTTTATTTGTTTATC
ATGGTCTCATGACTCAAATCACGGGTTTGACATGTTAAATCGAGTTATTTTTTTAACTATTTTT
TTTTCAGTTTCATCATTCGACATTAGATTTATTAGAAATTGAGTTTCATAATTTATTTTAATTT
GTTTTTTATGGGATTATCATGATTTCATGATTTGGTATGTAGATTGACAAGTTGACCCAAATTG
ATCTAATATATTGATGTCTTAATATTTATTTAAAAAATCACATTTTAAATATTTATTTTGAGTC
AAAATATATTTTGTTGGTCATCTAAATTGTTTTTGAACTCTCTAAGATGATTGAGTCACGTCAG
ATTGATTCTTACACTATTTAAATTTTTTTTTTACTAGAAAGAACATTTGCAATACCTAGACATC
TTAGAGAGTCTAGTACTGATCTAAACTCGAGAGAACATATATTTAACATAATCTCTAGAGCTAA
ACTAGAAAGAAAGAATGGTAAATATACAAGGAAGAAAAAAAAAATTGAGGGACCATATTTTTTA
AAACAAGGACCCAAACCGTGTCCTGGCATCTCAGGCCCAGACCACGCGTCTGACACCCCTGGGC
TCATGCCACGTGCTTGGGCCCAGTGCCAAACAACAACAATAATATCTGACGGTCCTTTCATTCT
ATGAATTTAATAGTACTCTTGGATGTAAGCGGTTTGATTTGAAGGTTGAAGTAATGAAGAACAT
AGAGGGAGCGTTTTATGTGAATTTGATGCCAGCGGATGCTAAATCTTTTGTGTCTTGCAGTGAC
AGTATCGTATAGAGCAATAAACACAGCACCCTGGCAACTATGCTTTATGTCAGAATCTGTATCT
ATCAATGCTTTATGAGACTGGTGTGGCTTTCATGAGTCACCTCCTCAATCATATGATATAGAAA
TGCTTGAGTTGCAAATACAAAATATTGACTGCTTATTGAATGCAGCTAATGTTTTTTCCCATCA
TTTATTCCAAACCATAGGCATCCGTTTCAGACTTGGTGATGGACCATCTCCCGTTCAAAAACTA
ATATAATCCAGGTACAACCATGGCAGCAACGTGCAAATCACATATCTGAAGCCACCCGCTTGTA
CAAGTGTGGAGGCAGGCGAGGAGTGGCCACTGCTTGTAGTGGGGTCATCATATAAGTGACAATT
CCAGGTCTTTCTGACATGTCAATTTCCTCCGGCTTGACACCATCAGGGGTGGTCCAATGAAAAT
GGTGGAGCAGATGACCGATCATAGACGTGACCAGATTGATGGCAAGCTGTGCACCAGGG
Conservation Information
Conserved circRNAs NA
PMCS 0.107892895
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zheng et al., 2020