Detail information of Os10g0320400_circ_igg.1


General Information
CircRNA Name Os10g0320400_circ_igg.1
ID in PlantcircBase osa_circ_006453
Alias Os10circ02199
Organism Oryza sativa
Position chr10: 8691865-8696431  JBrowse»
Reference genome IRGSP-1.0.38
Type   igg-circRNA
Identification method SMALT, Segemehl
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os10g0320400_circ_g.1 Os10g0320400_circ_g.2 Os10g0320400_circ_g.3 Os10g0320400_circ_g.4 Os10g0320400_circ_g.5 Os10g0320400_circ_g.6 Os10g0320400_circ_g.7 Os10g0320400_circ_g.8
Support reads 2
Tissues leaf
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TATGTATAATGCTGCTCTAGAGAATGCATGCAGTGAGCTTGGAGCACGTATGTCTGCCATGGAC
AGCTCCAGCAGAAACGCTGGTGAAATGCTTGATCGAcccaccactctccctcctctctctttcc
tcccaacctcttgcggccacacgagccaagcagcgagacccccggatcgaaacgcacaccggcg
gcgatggc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCCACCACTCTCCCTCCTCTCTCTTTCCTCCCAACCTCTTGCGGCCACACGAGCCAAGCAGCGA
GACCCCCGGATCGAAACGCACACCGGCGGCGATGGCGATGGCGGCGCTGCGACGGGACGGGAGG
CGCGTCCTCCTCTCCTCCACCCCATCCCCGGCGGCCGCCATGGCCGCGCGCTCCCCCGCCGCCG
CCCACCAGTAAGATCCCCTTTCCCTTTTCCCGCTCCGCCTCCCCCCCCTCTCTCTCTCCGCCAG
ATCCGCCTCCGGTTCGATTCGTCCGTCTCCGCTGGATCTGGCTGCGGATCTGGTGTTCCCGTGG
GCGAGTTTATTGGGCGACCAGTGGATTCATTACCCTCGGATTTGAGGCGCATCTAGGGCGAATT
GGAGTTGGTGCTTGCGGCTGCGAAATGTATGTGTGGGTGTGTTATGGGTTGTGGTGGTGATTGC
GTAGACGAAGGATTTGTAGTCTCCTTTTCTTTTCCCACCTTTAGTGGACGAGATTGGAATCCGT
ATGAACTTTGGCTGCATCCCCTTATGGATTATGAAATGGATGTGAATGCTGGAAAAGGGTTCTG
ATGCACTGCTACAAGGGAGAAAAAAAATCCATATGTAGTTGTAACTTTAATCTCACATGCTGTT
GACTGGTTCGGCATGTTGTTTGGTTTGTGATTGTCCACACGGATTGCAACCGCTCATAAAGTAT
GACTTGTATAGAAACCACTCATGTTTCTGGTGGGTTTTACTCTCATTGTCTTGCATTGAATGAT
TAGTACGAAATGTGCAGTGTCATAGATGTCATTTCTTGTTTGTTAAAATTGTAGCCTCGTATAG
CTGGTTACTTTTGTTGCAAACAATATGACATTATATTGTTAATTGCACATTTTTATCGTGCATG
TAAGTATTTACACCAAATTCCTTGGAATTATCTCTCTGCATGATCCATGCTTTTGTTATACATG
ACTGCTCGATTTCTCTTTAAATTATTCGCTTCTTGCTTCCACTATGTATTACTTTCTAACTGAA
TATACTGCGTATTTAAAAACCAGGGAGATTGCCCCACTAGGCGCACGTTCTGTTTCAACACAAG
TTGGTTAGGATCTTCCTTCTCTATTCTATTTCTTTCCGAACATATATATTGACCCTGGCAATTG
AAGCAAATTATTGGCCCCTCAACTAATAATACTTTTTTACAGTGAGAACCCGCATGAAGAGTGT
TAGGAACATCCAGAAGATTACAAAAGCAATGAAGATGGTTGCAGCATCAAAGCTTCGAGCTGTT
CAAATAAGAACAGAAAATTCACGTGGTCTATGGCAGCCATTCACCGCTCTTCTTGGGGATGTCC
CTAGTATGTTATGTTTCGTTGTAGTACATATTTACAGTACCTTTCTGCCGTAGTTATTATAGCT
AAAGTTGATGCCTATCTTATTGAATGTCATGATATGCTAGAAGCCTATGGCTACATTAGCATGC
CTGGCTGCCACAAATCAAATGTACAACCTTATTCATGATCTAGGAAGTTCATTTGATGTTGGTT
CTTAAAAGTCAATGGCATTCAAGGTAAGAGATATTTGATGGTGGGTAATTATCCCTGGTAAAGA
AATATGTAGATATATATACTATGGGTGAATCTTCTGAGCTATTGGTTCAGTGGTGTAAGCATGG
ACTCTACATCTATTTACTAGACACGCTTCTCACTAATTTATAAATGCACCACAGGTCTCATGCC
ACTTCTAATGATGCTGTGATCCTCAATTCATGAGGAAACATTGATAGGCTTGCCTGTTGAGTTT
ACTCCATGCTTGGATCTGTCTAAATTATTTAATTCTTACGGAACAGCAGTTTTAATTTAACTGA
ATTAGATTGACATCATGTCTTTTTGGCAATAAGATTATTGAGTTTTTGGTTTAGTTATTAATGT
CTTTGATGCAACCACCAGGTGTCGATGTCAAGAAGAATGTTATTGTAGCCATTACCTCTGACAA
GGGTCTTTGTGGTGGTATCAACTCAACGTCAGTTAAAGTCAGCAAAGCACTCCACAAGTTGACT
TCTGGTAATACTTTGCATGGTTATTTTTGTTATCATTTAAACATTAGAAGATACTAAAACAAAG
TTTTTGCACCTCAAATCAGGACCAGAGAAAGAAAGCAAGTATGTCATATTAGGAGAAAAGGGTA
AAGTTCAACTCATTCGTGACTCCAAGGATAACATCGAGATGACAGTATCTGAGTTGCAGAAGAA
CCCTATCAACTACACACAGGTATGTTGTTTTCCTGAGCTTTTACTATGCTATGGGTGCACCTTT
TATTATGAAATGCTATTCATTATTTGTGAATTTGTTTCTGAATTAAGTCTAAAGTTTGGCAATT
GAAAACTGTTTTGTAGTTTCTTATATTGTCAGTGAATTTTGCTCTCGAATTTTGAATTTTGCAA
GAGAAGCATTCCTAATGTAAAAGGAATTCTGTCATGTCACATTGGACTTCTGATTTGGAACACA
TTTCAATTTGTCAATGACTAATCTCTGTTATTATAGCCAAAATATATATACTGATTTATCAATC
TAAAATTTTACCAAATCAGACTCACTTCAGCCCACTCCGACTGTACCTTCCATTCCTTTTTCTC
CATACTTTCTCCTGTTGCTGGCAAGCTGGGGCTAAGACTTGTTACAGAAAATCACTCTTTGAGA
TACTCGAATGAGACATAGACATGATTGATCATCAAATGATGTGTTCCTCTTGTGTTTTAATAGT
AACACTAGTTAGGGACTAGGAATAAGGCAATGATGTTGGAGCTATTGCAAGCAATGAGGCAGGG
GAAGGGAGCCTGGTGCCATCTTGGGAGGCTCCCTGTTTCAATATTTCCTTAAGCCAGCCACCAC
TACCTGGGTTCTCTAAGGCTGTCACCTGTCCTGTCCTGCTGATGTGTCCACCTGTGCCACTGAA
TCACAGCTGCTATGTTGGGGGCTGACACAGCTGCCATATTGGATCTGACTTGGTTTTGCTGGCC
CTAGTTGGTGGGGAAAAAGGTCTGATAAGGGGATGGAGCATCAACCTGTGCTGAAAAAGTGGGA
GGAGGGTACGGTAGTCAAGTTGCATGGCTAGTCATGGACCAATTGACAAGTCAGCCACAGAGCA
CGACTTGAGGGCTACAATTTGATTTGGGAAACTTGGAATACGAGATAAGAGGAGAGCTGTTCAG
TTTTCTCCTCCATATATGATTAGAGGTAGCCACCGGAGTCTGAGTAAGATTAGAGGGAGCACCA
ATAGTTGCACACCTGCTTTCCTCATCTGCTCCCTGTTTTTTCTGACCTCACTTCTAATGTACCA
ACTCAAAGGCTTGTCTTTGACTAAGTCATGATTAGTCCTCAAGTTGGTTTAGGTCTTGAGGGAT
GACTAGACTGACTGTGCGACTAACAACCATGGCTGAAGAATAGCACATCGGCATGGAGAAATGT
GAAATATAGTGATGGATCTCATTGCTGTAGGATAAGGAATGGCACTGGTGGTGGCGCAAAGTTG
TGCAGTTAGCAGAATTAGTTTCAGCTGTGTTAATTACGTTGCAGCAGAAGTTCACGGATGTGGT
ATATTTCAATGAAACAAGAGAGGATTATGGTACTAGATGATGTGTGAGAAGAAAGTGTTTTTTA
GATTTAAGCTTCTAGTTATGCTGTAGGTTGAAATATCTCATTTTCCTTTGCAAAGAAAGATGAT
CTGGATCATATTCATCTTTTGTTATGTGTGCACGCATTGCAATATATCATAGCAGCTGGTATGA
TTTGAACAAAATTTGCTAACAAACCCTGAACTGTAAAAAGTCTTATGTTGTCTGACTTCCTTGA
AATGTCTTCAGGGAAGTTTTTGTTCAGTCGATTATTATTTGGTGGCTAAAGCAGATTTCAAAAA
CCTAATGTGCCTATTGGATTGAATAGATCTCCACTGTTTTCTTTGATGATGTTTCAGATTGCTG
TGCTGGCAGATGATATCTTGAAAAATGTTGAGTATGATGCTCTAAGGGTTGTTTTTAACAAGTT
CCACTCGGTCATATCATTCAAGCCCACAATGACAACCATACTTTCCCCAGAGGTAAATATCGGT
GCTGAGGACATGAATTTGTGCTCCTATAAAGTAATATGAATGATGTGACGTTAATACTAGTGGT
TTGAATTGTTTTATAGGTTATGGAGAAAGAATCGGAATCTGGTAAGGTTGGTGACCTGGATTCA
TATGAAATTGAAGGAGGTGAAACTAAATCAGAAATTCTTCAGAATCTTACCGAGTTCCAGTTTT
CTTGTGTAAGTTTGTCTTCATTAATCATATATACCTCTCAATAGATGAATTAGCTACAACTATT
ACAGCCACAAAATCAAGTCGCATCCATAAGGGTAAACGTTCCCTTTGTAGAGAGCGCAATCATT
CTTTTTTCAAGGTATCCTAGTGGTATCTTATGTTTTTGCTTTGTGGCAGGTTATGTATAATGCT
GCTCTAGAGAATGCATGCAGTGAGCTTGGAGCACGTATGTCTGCCATGGACAGCTCCAGCAGAA
ACGCTGGTGAAATGCTTGATCGA
Conservation Information
Conserved circRNAs NA
PMCS 0.111399684
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs osa-miR529a
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Lu et al., 2015