Detail information of Os11g0703900_circ_g.2


General Information
CircRNA Name Os11g0703900_circ_g.2
ID in PlantcircBase osa_circ_010089
Alias Os_ciR7186
Organism Oryza sativa
Position chr11: 28804339-28806528  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method find_circ
Parent gene Os11g0703900
Parent gene annotation Heat shock protein 70. (Os11t0703900-01);Similar to Heat shock p
rotein 70. (Os11t0703900-02)
Parent gene strand +
Alternative splicing Os11g0703900_circ_g.1 Os11g0703900_circ_g.3 Os11g0703900_circ_g.4 Os11g0703900_circ_g.5 Os11g0703900_circ_g.6 Os11g0703900_circ_g.7 Os11g0703900_circ_g.8 Os11g0703900_circ_g.9 Os11g0703900_circ_g.10 Os11g0703900_circ_g.11 Os11g0703900_circ_g.12 Os11g0703900_circ_g.13
Support reads 2
Tissues root
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered Os11t0703900-01:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTGCTGACATTGAGTCTTCTCTGCAGATGCCAAGCGTCTCATTGGCAGGAGGTTTAGCGATGCT
TCTGTTCAGAGTGACATTAAGCTCTGGCCCTTCAAGggcgagggtccggccatcggcatcgacc
ttggcacgacctactcgtgcgtgggcgtttggcagcacgaccgcgtggagatcatcgccaacga
ccagggca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGCGAGGGTCCGGCCATCGGCATCGACCTTGGCACGACCTACTCGTGCGTGGGCGTTTGGCAGC
ACGACCGCGTGGAGATCATCGCCAACGACCAGGGCAACCGCACCACCCCCTCCTACGTCGGCTT
CACCGACTCCGAGAGGCTCATCGGAGATGCTGCCAAGAACCAGGTCGCCATGAACCCCATCAAC
ACCGTCTTTGGTAACTACTTATTCCCTGCTCCTCAGTCCTCTCTCTTTCTCTCTCTCCCCCCTT
AGATCTCATCTCTAAGGTCTTCGTCGTCGTCGTATGCTAGATCTACTCTTGCCCAGCTCGTTCA
GATCTGTTAGATTTGTGTGGGATGCTCTAATTAATTACTACCAACTTAGTAGATCTGGAACTCT
TTTGACTTGCAGATCTTGCTCCACTCCTGTTGCATTTTGAATCTGTGTTGATGTGATTTAAGTT
GTTGGCAGTGCTTTTTGCATACTATTTGAATTTGTGGATGGTTAGCAGTCAGTACACTAGGATT
TATTACTGGATCTGGACAGATATGCTCGTTTCAATCGGCTCGATTTGCTATGTTGATAGCTAAC
ATGTTGTGCTTGTCCTACTGCCCTGGCGCAAATTTGATCCATGCATTCTTTTCGTTAAATGATT
TGTCAAGTAGTAATGCTTGTTTGAAAATGATATTATTATTATTATTATTATTTTAAATAAATAT
AGCCTGAAACATTCTTAGTTTCGAGGAGAAGTGATGATGTCTTATCCATACCACATGTCTGCAT
CTCATATGATGATTAATCTACATCATGCACTACCATCTGATCTCCTCTAGCTCATACAGCTTTT
AACAAGTTAGGCGATAGATGTTTGCTACAAACAGTCAACTGGATTTGCTTTCTTGAAAGAAAAA
AAATGAACCGTGTAGTTTGCAACCTGTGATGTAAATTAACCCATTTACTGAACTACATTGATTA
TTTCAGTAAAATCACCATCTTTCGGCTGAGGTTGCATGCTTAGTTATTATATTTTTACCAATGA
TGATTTTGTTATGTAGCCAGATACTGTACTTTCTTATGCCATTTGGTATCTGACTCATTGTCTA
CTTTTGTGACTATGTGTCTCGAAATATGGCATATAATAAGGGGGAACGGATCTTGCGACATTGA
TGGCTCCTGTATGAGCCTCCAATTACTATATAGCCGTTTACATGTTCTTATCATGTTACTTTTC
CAAATTAGTGCTGCACATCTTGTCTGTTTGCAAGTTTGGGTTCATTCATATTGCTGTGGGCATT
TTAATACATCTTAACTATAATGTAAATTTCTTGTACATCGCTAAAATTTTCTGCCTTGATTGAG
TAGACTCTTAGATGACATCTATCTTACCTTATGCACTTGATTCGTATTTCTGTTACAACATTTT
GATTACTTGATGTAGTTCACACAAGCATGACACATCTCTTTGAAAAAAAGATTTCATTTTTTAA
AGCAAGCCTAATGCTTTAGGGTGGGAGAAGTGATGATACTTAATCCATACAACATTTCTGCATC
TCAGATGATGATCAATCTACATCATGCACTACCATCTGATCTCCCCATCATACAATTTTTTATT
TTGTTTTGTTGGATTATATAACTTTAACATTTGATAAAGTGCCAACAGATTTTTATACACAATT
TCTTATAGATATTACCATGACAGCTTGCAGCCTGTGATGCAAAAGTACCCATTAAACTGAATTA
CACTGATTATTCCAAACAAATCACCATCTTTCGGCTGAGGTTGCTTGCTTGTTTAAAATTATGA
ATGCTTCTTGCACAACCATTTAGGACTTTCGGTAGTTTGTAATGCCATTTGGTATCTGACACAT
GGTCTGCGCTTGTGACTATTTGTCTTGAAATATGGCATAAAACAAGGGGGAACGGATCTTGCGA
CATTGGTGGTTCCTCTATGATCCTCCAATTACTATATAGCTGTTTACAATTTGTTAAGTTAGGA
GCATACCTTTTGCTTTGTCATCAAAGTCTTGGTTCCTTTGTATTTCTAGTTCAGATTCATTTTT
CTTCAGCTTTTGAAACATAAACTCAGTATATTTTTACTGTAATTGCTGACATTGAGTCTTCTCT
GCAGATGCCAAGCGTCTCATTGGCAGGAGGTTTAGCGATGCTTCTGTTCAGAGTGACATTAAGC
TCTGGCCCTTCAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.144336256
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs osa-miR2919
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015