Detail information of BGIOSGA016988_circ_g.5


General Information
CircRNA Name BGIOSGA016988_circ_g.5
ID in PlantcircBase osi_circ_005682
Alias 4:28265177|28265374
Organism Oryza sativa ssp. indica
Position chr4: 28265177-28265374  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA016988
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA016988_circ_g.3 BGIOSGA016988_circ_g.4 BGIOSGA016988_circ_g.6 BGIOSGA016988_circ_g.7
Support reads NA
Tissues leaf
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered BGIOSGA016988-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTCTCTAAATGCAGCCGATTCAACGAGCTCATCGAGCTTCTGAAGGATATGCAAGGCACACGAC
TGGACAGGAGGCTGTACCTGACCGTGTTGAGGAGCcggtcgggagaactggaccggtgcatgga
tttgtaccaggagttcagggagacaggaggaaaggtggacacggccctggctgggctcatggta
ggggtg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CGGTCGGGAGAACTGGACCGGTGCATGGATTTGTACCAGGAGTTCAGGGAGACAGGAGGAAAGG
TGGACACGGCCCTGGCTGGGCTCATGGTAGGGGTGTTCTCTAAATGCAGCCGATTCAACGAGCT
CATCGAGCTTCTGAAGGATATGCAAGGCACACGACTGGACAGGAGGCTGTACCTGACCGTGTTG
AGGAGC
Conservation Information
Conserved circRNAs osa_circ_024989* osa_circ_024990 osa_circ_024987*
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021